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Updated: Jun 15, 2026

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Genome-wide Mapping of Protein-DNA Interactions with ChEC-seq in Saccharomyces cerevisiae
Published on: June 3, 2017
Evaluation of DNA intramolecular interactions for nucleosome positioning in yeast
Michael Fernandez1, Satoshi Fujii, Hidetoshi Kono
1Department of Bioscience and Bioinformatics, Kyushu Institute of Technology (KIT), Iizuka 820-8502, Japan. re0701m@bio.kyutech.ac.jp
Genome Informatics. International Conference on Genome Informatics
|February 25, 2010
Abstract:
We calculated intramolecular interaction energies of DNA by threading DNA sequences around crystal structures of nucleosomes. The strength of the intramolecular energy oscillations at frequency approximately 10 bps for dinucleotides was in agreement with previous nucleosome models. The intramolecular energy calculated along yeast genome positively correlated with nucleosome positioning experimentally measured.

