Related Experiment Video
Updated: Jun 15, 2026

Labeling Stem Cells with Fluorescent Dyes for non-invasive Detection with Optical Imaging
Published on: April 2, 2008
Optical spectroscopy for noninvasive monitoring of stem cell differentiation
Andrew Downes1, Rabah Mouras, Alistair Elfick
1School of Engineering, The University of Edinburgh, Edinburgh EH9 3JL, UK. andy.downes@ed.ac.uk
Abstract:
There is a requirement for a noninvasive technique to monitor stem cell differentiation. Several candidates based on optical spectroscopy are discussed in this review: Fourier transform infrared (FTIR) spectroscopy, Raman spectroscopy, and coherent anti-Stokes Raman scattering (CARS) microscopy. These techniques are briefly described, and the ability of each to distinguish undifferentiated from differentiated cells is discussed. FTIR spectroscopy has demonstrated its ability to distinguish between stem cells and their derivatives. Raman spectroscopy shows a clear reduction in DNA and RNA concentrations during embryonic stem cell differentiation (agreeing with the well-known reduction in the nucleus to cytoplasm ratio) and also shows clear increases in mineral content during differentiation of mesenchymal stem cells. CARS microscopy can map these DNA, RNA, and mineral concentrations at high speed, and Mutliplex CARS spectroscopy/microscopy is highlighted as the technique with most promise for future applications.

