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Updated: Jun 15, 2026

3D Culturing of Organoids from the Intestinal Villi Epithelium Undergoing Dedifferentiation
Published on: April 1, 2021
Sox9 expression marks a subset of CD24-expressing small intestine epithelial stem cells that form organoids in vitro
Adam D Gracz1, Sendhilnathan Ramalingam, Scott T Magness
1Department of Medicine, University of North Carolina at Chapel Hill, USA.
Abstract:
The inability to identify, isolate, and culture intestinal epithelial stem cells (IESCs) has been prohibitive to the study and therapeutic utilization of these cells. Using a Sox9(EGFP) mouse model, we demonstrate that Sox9(EGFP) fluorescence signatures can be used to differentiate between and enrich for progenitors (Sox9(EGFPsubLo)) and multipotent IESCs (Sox9(EGFPlo)). Sox9(EGFPlo) cells generate "organoids" in a recently defined culture system that mimics the native IESC niche. These organoids possess all four differentiated cell types of the small intestine epithelium, demonstrating the multipotent capacity of Sox9(EGFPlo) cells. Our results are consistent with the previously reported observation that single IESCs generate cryptlike units without a detectable mesenchymal cell component. A prospective search revealed that CD24 is expressed in the Sox9(EGFPlo) population and marks IESCs that form organoids in culture. CD24 represents the first cell surface marker that facilitates fluorescence-activated cell sorting enrichment of IESCs with widely available antibodies without requiring a specialized fluorescent reporter gene mouse model.
Insights
Researchers identified a new method to isolate intestinal epithelial stem cells (IESCs) using the CD24 marker. This breakthrough enables better study and therapeutic use of these vital stem cells.
Area of Science:
- Cell Biology
- Stem Cell Research
- Gastroenterology
Background:
- Intestinal epithelial stem cells (IESCs) are crucial for gut health but difficult to isolate and culture.
- Previous methods lacked efficient ways to identify and enrich these specific stem cells.
Purpose of the Study:
- To develop a reliable method for identifying, isolating, and culturing intestinal epithelial stem cells (IESCs).
- To find a cell surface marker for IESC enrichment without specialized mouse models.
Main Methods:
- Utilized a Sox9(EGFP) mouse model to analyze fluorescence signatures for IESC differentiation.
- Developed a culture system mimicking the IESC niche to generate organoids.
- Conducted a prospective search for cell surface markers on IESCs.
Main Results:
- Sox9(EGFP) fluorescence distinguished progenitors from multipotent IESCs (Sox9(EGFPlo)).
- Sox9(EGFPlo) cells formed organoids containing all four intestinal epithelial cell types, confirming multipotency.
- CD24 was identified as a marker for IESCs capable of forming organoids.
Conclusions:
- CD24 is the first cell surface marker enabling fluorescence-activated cell sorting (FACS) enrichment of IESCs.
- This discovery bypasses the need for specialized reporter gene mouse models for IESC isolation.
- The findings pave the way for improved study and therapeutic applications of intestinal stem cells.
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