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Updated: Jun 15, 2026

A Practical Guide to Phylogenetics for Nonexperts
Published on: February 5, 2014
Visualization of multiple alignments, phylogenies and gene family evolution
James B Procter1, Julie Thompson, Ivica Letunic
1University of Dundee, UK. j.procter@dundee.ac.uk
Abstract:
Software for visualizing sequence alignments and trees are essential tools for life scientists. In this review, we describe the major features and capabilities of a selection of stand-alone and web-based applications useful when investigating the function and evolution of a gene family. These range from simple viewers, to systems that provide sophisticated editing and analysis functions. We conclude with a discussion of the challenges that these tools now face due to the flood of next generation sequence data and the increasingly complex network of bioinformatics information sources.
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