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Updated: Jun 15, 2026

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Characterization of Aquatic Biofilms with Flow Cytometry
Published on: June 6, 2018
Faecal indicator bacteria in river biofilms.
M Balzer1, N Witt, H-C Flemming
1Biofilm Centre, Department of Aquatic Microbiology, University of Duisburg-Essen, D-47057 Duisburg, Germany. mathiasbalzer@web.de
Summary
River biofilms harbor significant concentrations of fecal indicator bacteria, including Escherichia coli (E. coli) and enterococci. These biofilms act as reservoirs for potential pathogens in polluted waters.
Area of Science:
- Environmental microbiology
- Water quality monitoring
- Riverine ecosystems
Background:
- Surface water biofilms are primarily composed of non-native microorganisms.
- Pollution introduces fecal bacteria that can interact with these biofilms.
- Fecal indicators like total coliforms, E. coli, and enterococci signal fecal contamination and potential pathogen presence.
Purpose of the Study:
- To investigate the occurrence of fecal indicator bacteria in German river biofilms (epilithic biofilms and sediments).
- To assess the survival and potential role of these bacteria within biofilm communities.
Main Methods:
- Sampling of epilithic biofilms and sediments from German rivers.
- Quantification of total coliforms, E. coli, and intestinal enterococci.
- Comparison of bacterial concentrations in biofilms versus overlying water.
- Identification of coliform and enterococcal isolates to determine species present.
Main Results:
- All investigated biofilms contained significant concentrations of fecal indicator bacteria.
- Fecal indicator bacteria represented a minor fraction of the total biofilm community.
- Biofilms showed approximately 100-fold higher concentrations of fecal indicators compared to the overlying water.
- Identified isolates included opportunistic pathogens.
Conclusions:
- Fecal indicator bacteria can survive in river biofilms alongside high densities of native microflora.
- River biofilms may serve as reservoirs for bacterial pathogens in polluted aquatic environments.
- This highlights the importance of biofilms in understanding pathogen dynamics in rivers.

