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Related Concept Videos

Inorganic Nitrogen Assimilation01:22

Inorganic Nitrogen Assimilation

Nitrogen is an essential element in biological systems, forming a crucial component of proteins, nucleic acids, and other cellular constituents. Many bacteria and archaea acquire nitrogen in the form of nitrate (NO₃⁻) or ammonia (NH₃), which are then assimilated into biomolecules through specific enzymatic pathways.Assimilatory Nitrate ReductionWhen nitrate enters the cell, it undergoes a two-step reduction process known as assimilatory nitrate reduction. Initially, the enzyme nitrate reductase...
The Nitrogen Cycle01:49

The Nitrogen Cycle

Nitrogen atoms, present in all proteins and DNA, are recycled between abiotic and biotic components of the ecosystem. However, the primary form of nitrogen on Earth is nitrogen gas, which cannot be used by most animals and plants. Thus, nitrogen gas must first be converted into a usable form by nitrogen-fixing bacteria before it can be cycled through other living organisms. The use of nitrogen-containing fertilizers and animal waste products in human agriculture has greatly influenced the...
Microbes and the Nitrogen Cycle01:26

Microbes and the Nitrogen Cycle

The nitrogen cycle is a complex biogeochemical process critical to maintaining the balance of nitrogenous compounds in ecosystems. This cycle involves multiple microbial-mediated transformations through which nitrogen changes oxidation states, supporting essential ecological functions and contributing to plant and microbial growth.Nitrogen Fixation and AmmonificationNitrogen fixation initiates the cycle by converting inert atmospheric nitrogen (N₂) into bioavailable ammonia (NH₃), a process...
Overview of Nitrogen Metabolism01:20

Overview of Nitrogen Metabolism

Nitrogen is a very important element for life because it is a major constituent of proteins and nucleic acids. It is a macronutrient, and in nature, it is recycled from organic compounds and stored in the form of  ammonia, ammonium ions, nitrate, nitrite, or  nitrogen gas by many metabolic processes. Many of these metabolic processes are carried out only by prokaryotes.
The largest pool of nitrogen available in the terrestrial ecosystem is gaseous nitrogen (N2) from the air, but this nitrogen...
Metabolism of Chemolithotrophs01:15

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Chemolithotrophs are microorganisms that obtain energy by oxidizing inorganic molecules such as hydrogen gas (H₂), ammonia (NH₃), reduced sulfur compounds (H₂S, S²⁻), and ferrous iron (Fe²⁺). Unlike heterotrophic organisms that rely on organic carbon, chemolithotrophs transfer electrons from these inorganic donors to the electron transport chain (ETC), generating a proton motive force (PMF) that drives ATP synthesis through oxidative phosphorylation. However, because inorganic electron donors...
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Carbon-dioxide Fixation

Carbon dioxide fixation in prokaryotes enables the assimilation of inorganic carbon into organic molecules, supporting biosynthetic pathways, sustaining ecosystems, and contributing to the global carbon cycle. It also has industrial applications in carbon capture and bioproduct synthesis. Autotrophic organisms rely on this process to utilize CO₂ as a carbon source in diverse environments.The Calvin CycleThe Calvin cycle is the most widespread carbon fixation mechanism, primarily used by...

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S 2B or not 2B?

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Deserts, Rivers, Pools, and Billabongs: Water Features of the Nitrogenase Proteins, and their Functions.

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Related Experiment Video

Updated: Jun 15, 2026

Measurement of the Potential Rates of Dissimilatory Nitrate Reduction to Ammonium Based on 14NH4+/15NH4+ Analyses via Sequential Conversion to N2O
08:05

Measurement of the Potential Rates of Dissimilatory Nitrate Reduction to Ammonium Based on 14NH4+/15NH4+ Analyses via Sequential Conversion to N2O

Published on: October 7, 2020

Mimicking nitrogenase.

Ian Dance1

  • 1School of Chemistry, University of New South Wales, Sydney, 2052, Australia. i.dance@unsw.edu.au

Dalton Transactions (Cambridge, England : 2003)
|March 12, 2010
PubMed
Summary

This study theoretically assesses metal sulfide clusters as models for nitrogenase, the enzyme catalyzing ammonia production from nitrogen. Promising M1 clusters show potential for mimicking nitrogenase intermediates, aiding in the design of artificial nitrogen fixation catalysts.

Area of Science:

  • Bioinorganic Chemistry
  • Computational Chemistry
  • Catalysis

Background:

  • The enzyme nitrogenase catalyzes the conversion of atmospheric nitrogen (N(2)) to ammonia (NH(3)) under mild conditions.
  • The active site of nitrogenase, FeMo-co, contains a unique NFe(7)MoS(9) core.
  • Understanding nitrogenase's mechanism is crucial for developing artificial nitrogen fixation catalysts.

Purpose of the Study:

  • To theoretically evaluate metal sulfide clusters as functional models of the nitrogenase active site (FeMo-co).
  • To assess the ability of these models to mimic intermediates in the proposed nitrogenase mechanism.
  • To identify promising cluster designs for artificial nitrogen fixation.

Main Methods:

  • Theoretical assessment using density functional simulations.

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Measurement of the Potential Rates of Dissimilatory Nitrate Reduction to Ammonium Based on 14NH4+/15NH4+ Analyses via Sequential Conversion to N2O
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Ammonia Synthesis at Low Pressure
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Ammonia Synthesis at Low Pressure

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  • Focus on metal sulfide clusters with an X(c)Fe(4)S(4) face, mimicking FeMo-co's active site.
  • Evaluation of M1 clusters, {(tpb)Mo(mu(3)-S)(3)Fe(2)(Fe-L)S(c)(mu-S)(2)(Fe-L)Fe(2)(mu(3)-S)(3)Mo(tpb)}, for their mechanistic mimicry.
  • Main Results:

    • M1 clusters, with well-developed syntheses, show promise as functional models.
    • Simulations indicate M1 clusters can mimic key intermediates in the nitrogenase mechanism.
    • Elaborations of M1, including ligand modification, are proposed to enhance FeMo-co mimicry.

    Conclusions:

    • Metal sulfide clusters, particularly elaborated M1 systems, are viable models for studying nitrogenase's FeMo-co active site.
    • Ligand modification of M1 clusters can tune their properties for proton relay and prevent unwanted side reactions.
    • The P-cluster of nitrogenase may have evolved from a relic catalytic site for N(2) reduction.