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In Vitro Cleavage Assays using Purified Recombinant Drosophila Caspases for Substrate Screening
Published on: October 6, 2022
Caspase-dependent conversion of Dicer ribonuclease into a death-promoting deoxyribonuclease
Akihisa Nakagawa1, Yong Shi, Eriko Kage-Nakadai
1Department of Molecular, Cellular, and Developmental Biology, University of Colorado, Boulder, CO 80309, USA.
Abstract:
Chromosome fragmentation is a hallmark of apoptosis, conserved in diverse organisms. In mammals, caspases activate apoptotic chromosome fragmentation by cleaving and inactivating an apoptotic nuclease inhibitor. We report that inactivation of the Caenorhabditis elegans dcr-1 gene, which encodes the Dicer ribonuclease important for processing of small RNAs, compromises apoptosis and blocks apoptotic chromosome fragmentation. DCR-1 was cleaved by the CED-3 caspase to generate a C-terminal fragment with deoxyribonuclease activity, which produced 3' hydroxyl DNA breaks on chromosomes and promoted apoptosis. Thus, caspase-mediated activation of apoptotic DNA degradation is conserved. DCR-1 functions in fragmenting chromosomal DNA during apoptosis, in addition to processing of small RNAs, and undergoes a protease-mediated conversion from a ribonuclease to a deoxyribonuclease.
Insights
The study reveals that Dicer (DCR-1), an enzyme crucial for small RNA processing, also fragments DNA during apoptosis in C. elegans. Caspase-mediated cleavage converts DCR-1 into a deoxyribonuclease, conserving DNA degradation pathways.
Area of Science:
- Cell Biology
- Molecular Biology
- Genetics
Background:
- Chromosome fragmentation is a key event in apoptosis across species.
- In mammals, caspases trigger this fragmentation by inhibiting nucleases.
Purpose of the Study:
- To investigate the role of Caenorhabditis elegans Dicer (DCR-1) in apoptotic chromosome fragmentation.
- To elucidate the mechanism of caspase-mediated DNA degradation during apoptosis.
Main Methods:
- Gene inactivation of dcr-1 in C. elegans.
- Analysis of apoptosis and chromosome fragmentation.
- Biochemical assays to determine nuclease activity.
Main Results:
- dcr-1 inactivation impaired apoptosis and blocked chromosome fragmentation.
- The CED-3 caspase cleaved DCR-1, generating a C-terminal fragment with deoxyribonuclease activity.
- This DCR-1 fragment induced 3' hydroxyl DNA breaks, promoting apoptosis.
Conclusions:
- Caspase-mediated activation of DNA degradation is conserved in apoptosis.
- DCR-1 plays a dual role: small RNA processing and chromosomal DNA fragmentation during apoptosis.
- Protease-mediated conversion of DCR-1 from ribonuclease to deoxyribonuclease is a key regulatory step.
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