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Updated: Jun 15, 2026

Characterizing Individual Protein Aggregates by Infrared Nanospectroscopy and Atomic Force Microscopy
Published on: September 12, 2019
Combination of atomic force microscopy and principal component analysis as a general method for direct recognition of
Bruno Torre1, Manuele Bicego, Marco Cristiani
1Istituto Italiano di Tecnologia, Via Morego 30, Genoa, Italy.
Abstract:
In this work, we report a simple method to direct identify nanometer sized textures in composite materials by means of AFM spectroscopy, aiming at recognizing structured region to be further investigated. It consists in acquiring a set of dynamic data organized in spectroscopy maps and subsequently extracting most valuable information by means of the principal component analysis (PCA) method. This algorithm projects the information of D spectroscopy curves, each containing P data, acquired at each point of an LxC grid into a subset of LxC maps without any assumption on the sample structure, filtering out redundancies and noise. As a consequence, a huge amount of 3D data is condensed into few 2D maps, easy to be examined. Results of this algorithm allow to find and locate regions of interest within the map, allowing a further reduction of data series to be extensively analyzed or modeled. In this work, we explain the main features of the method and show its application on a nanocomposite sample. Microsc. Res. Tech. 73:973-981, 2010. © 2010 Wiley-Liss, Inc.

