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Updated: Jun 14, 2026

Sample Preparation to Bioinformatics Analysis of DNA Methylation: Association Strategy for Obesity and Related Trait Studies
Published on: May 6, 2022
DNA methylation as a biomarker for cardiovascular disease risk
Myungjin Kim1, Tiffany I Long, Kazuko Arakawa
1Department of Surgery, Norris Comprehensive Cancer Center, Keck School of Medicine, University of Southern California, Los Angeles, California, United States of America.
Insights
Elevated DNA methylation in peripheral blood leukocytes is linked to cardiovascular disease (CVD) and obesity in Singapore Chinese men, contrary to expectations. This finding has implications for understanding CVD risk factors.
Area of Science:
- Epigenetics and Cardiovascular Health
- Population-based Health Studies
- Genomic Methylation Analysis
Background:
- Elevated serum homocysteine is a known risk factor for cardiovascular disease (CVD).
- Reduced systemic remethylation capacity was hypothesized to decrease genomic DNA methylation.
- Peripheral blood leukocytes (PBL) global genomic DNA methylation was investigated as a potential biomarker.
Purpose of the Study:
- To examine the association between cardiovascular disease (CVD) and its predisposing conditions with PBL global genomic DNA methylation.
- To investigate sex-specific differences in the relationship between DNA methylation and CVD risk factors.
- To explore the association of body mass index with DNA methylation in the study population.
Main Methods:
- Analysis of ALU and Satellite 2 (AS) repetitive element DNA methylation in 286 participants from the Singapore Chinese Health Study.
- Comparison of DNA methylation levels between individuals with and without prevalent CVD and its predisposing conditions (hypertension, diabetes).
- Longitudinal assessment of incident CVD cases and their association with baseline DNA methylation levels.
Main Results:
- Men showed significantly higher global DNA methylation than women.
- Elevated global DNA methylation was associated with prevalent CVD/predisposing conditions in men, but not in women.
- In men, a trend of increasing DNA methylation was observed with increasing CVD/predisposing conditions, and body mass index was positively associated with DNA methylation in both sexes.
Conclusions:
- Contrary to hypotheses, elevated PBL DNA methylation, not decreased, is positively associated with CVD/predisposing conditions in Singapore Chinese.
- The findings suggest a potential role of increased DNA methylation in the development of CVD and obesity in this population.
- Sex differences exist in the association between DNA methylation and cardiovascular risk factors.
Background:
Elevated serum homocysteine is associated with an increased risk of cardiovascular disease (CVD). This may reflect a reduced systemic remethylation capacity, which would be expected to cause decreased genomic DNA methylation in peripheral blood leukocytes (PBL).
Methodology/Principal Findings:
We examined the association between prevalence of CVD (myocardial infarction, stroke) and its predisposing conditions (hypertension, diabetes) and PBL global genomic DNA methylation as represented by ALU and Satellite 2 (AS) repetitive element DNA methylation in 286 participants of the Singapore Chinese Health Study, a population-based prospective investigation of 63,257 men and women aged 45-74 years recruited during 1993-1998. Men exhibited significantly higher global DNA methylation [geometric mean (95% confidence interval (CI)): 159 (143, 178)] than women [133 (121, 147)] (P = 0.01). Global DNA methylation was significantly elevated in men with a history of CVD or its predisposing conditions at baseline (P = 0.03) but not in women (P = 0.53). Fifty-two subjects (22 men, 30 women) who were negative for these CVD/predisposing conditions at baseline acquired one or more of these conditions by the time of their follow-up I interviews, which took place on average about 5.8 years post-enrollment. Global DNA methylation levels of the 22 incident cases in men were intermediate (AS, 177) relative to the 56 male subjects who remained free of CVD/predisposing conditions at follow-up (lowest AS, 132) and the 51 male subjects with a diagnosis of CVD or predisposing conditions reported at baseline (highest AS 184) (P for trend = 0.0008) No such association was observed in women (P = 0.91). Baseline body mass index was positively associated with AS in both men and women (P = 0.007).
Conclusions/Significance:
Our findings indicate that elevated, not decreased, PBL DNA methylation is positively associated with prevalence of CVD/predisposing conditions and obesity in Singapore Chinese.
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