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Optimized Negative Staining: a High-throughput Protocol for Examining Small and Asymmetric Protein Structure by Electron Microscopy
Published on: August 15, 2014
Structure of the minimal interface between ApoE and LRP
Miklos Guttman1, J Helena Prieto, Tracy M Handel
1Department of Chemistry and Biochemistry, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA 92093-0378, USA.
Insights
Researchers studied the interaction between Apolipoprotein E (ApoE) and low-density lipoprotein receptor (LDLR) family proteins. They found that binding ApoE to a specific LDLR repeat (CR17) caused significant dynamic changes, revealing insights into cholesterol homeostasis mechanisms.
Area of Science:
- Biochemistry
- Structural Biology
- Molecular Interactions
Background:
- Complement-type repeats (CRs) in the low-density lipoprotein receptor (LDLR) family mediate ligand interactions.
- Apolipoprotein E (ApoE) is crucial for cholesterol homeostasis and interacts with LDLR-related protein 1 (LRP) via CRs.
- The ApoE receptor-binding segment (residues 130-149) shows weak affinity for isolated CRs.
Purpose of the Study:
- To elucidate the structure of a complex formed by a high-affinity LRP CR (CR17) and the ApoE receptor-binding segment.
- To investigate the structural and dynamic changes upon complex formation.
Main Methods:
- Protein engineering: Fusing the ApoE receptor-binding segment to CR17.
- Structural elucidation of the complex.
- Nuclear Magnetic Resonance (NMR) perturbation experiments to study dynamics.
Main Results:
- The interface revealed a known motif with novel features.
- Minimal structural changes were observed in CR17 upon binding.
- Significant alterations in the intrinsic dynamics of CR17 were detected after binding ApoE.
- NMR data suggest this interface resembles other LDLR-ligand interactions.
Conclusions:
- The study provides structural and dynamic insights into the ApoE-LRP interaction.
- Binding of ApoE to CR17 induces significant dynamic changes, rather than major structural rearrangements.
- The findings may generalize to other ligand interactions within the LDLR superfamily, impacting cholesterol transport understanding.
Abstract:
Clusters of complement-type ligand-binding repeats (CRs) in the low-density lipoprotein receptor (LDLR) family are thought to mediate the interactions with their various ligands. Apolipoprotein E (ApoE), a key ligand for cholesterol homeostasis, has been shown to interact with LDLR-related protein 1 (LRP) through these clusters. The segment comprising the receptor-binding portion of ApoE (residues 130-149) has been found to have a weak affinity for isolated CRs. We have fused this region of ApoE to a high-affinity CR from LRP (CR17) for structural elucidation of the complex. The interface reveals a motif that has previously been observed in CR domains with other binding partners, but with several novel features. Comparison to free CR17 reveals that very few structural changes result from this binding event, but significant changes in intrinsic dynamics are observed upon binding. NMR perturbation experiments suggest that this interface may be similar to several other ligand interactions with LDLRs.
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