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Updated: Jun 14, 2026

Following the Dynamics of Structural Variants in Experimentally Evolved Populations
Published on: February 3, 2023
Statistical-mechanical study of evolution of robustness in noisy environments
Ayaka Sakata1, Koji Hukushima, Kunihiko Kaneko
1Graduate School of Arts and Sciences, The University of Tokyo, Komaba, Meguro-ku, Tokyo 153-8902, Japan. ayaka@huku.c.u-tokyo.ac.jp
Abstract:
In biological systems, expression dynamics that can provide fitted phenotype patterns with respect to a specific function have evolved through mutations. This has been observed in the evolution of proteins for realizing folding dynamics through which a target structure is shaped. We study this evolutionary process by introducing a statistical-mechanical model of interacting spins, where a configuration of spins and their interactions J represent a phenotype and genotype, respectively. The phenotype dynamics are given by a stochastic process with temperature TS under a Hamiltonian with J. The evolution of J is also stochastic with temperature TJ and follows mutations introduced into J and selection based on a fitness defined for a configuration of a given set of target spins. Below a certain temperature TS(c2), the interactions J that achieve the target pattern evolve, whereas another phase transition is observed at TS(c1)
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