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Updated: Jun 14, 2026

A Robust Discovery Platform for the Identification of Novel Mediators of Melanoma Metastasis
Published on: March 8, 2022
Silencing and re-expression of retinoic acid receptor beta2 in human melanoma
Jun Fan1, Linda Eastham, Melinda E Varney
1Department of Biochemistry & Microbiology, Joan C. Edwards School of Medicine, Marshall University, Huntington, WV, USA.
Abstract:
Many melanoma cells are resistant to the anti-proliferative effect of all trans retinoic acid (ATRA). Retinoic Acid Receptor-beta2 (RAR-beta2) mediates the ATRA growth inhibition. We found a correlation between the anti-proliferative activity of ATRA and expression of RAR-beta2. There was not a strict correlation between DNA methylation of RAR-beta gene and its expression. There was no difference in global and RARbeta specific nucleosome repeat length (NRL) in melanoma and melanocytes or between control and ATRA treated cells. Pan-acetylation of H3 and H4 within the RAR-beta gene promoter was higher in cells expressing RAR-beta2. All trans retinoic acid treatment of responsive cells did not change pan-acetylation of H3/H4, but addition of ATRA to non-responsive cells increased H4 pan-acetylation. Phytochemicals or the histone deacetylase inhibitor Trichostatin A did not restore expression of RAR-beta2. Treatment of WM1366 melanoma cells with 5-aza 2'-deoxycytidine reactivated RAR-beta2 gene expression and restored the ability of ATRA to further induce the expression of this gene. Therefore, promoter methylation is responsible for silencing of RAR-beta2 in some melanoma cells and pan-acetylation of H3 likely plays a permissive role in expression of RAR-beta2.
Insights
Melanoma cells often resist all-trans retinoic acid (ATRA) treatment. Promoter methylation silences the Retinoic Acid Receptor-beta2 (RAR-beta2) gene, hindering ATRA
Area of Science:
- Oncology
- Molecular Biology
- Epigenetics
Background:
- Melanoma cells exhibit resistance to the anti-proliferative effects of all-trans retinoic acid (ATRA).
- Retinoic Acid Receptor-beta2 (RAR-beta2) is a key mediator of ATRA-induced growth inhibition.
- Expression of RAR-beta2 correlates with ATRA sensitivity in melanoma cells.
Purpose of the Study:
- To investigate the mechanisms underlying RAR-beta2 silencing in ATRA-resistant melanoma cells.
- To explore the role of DNA methylation and histone acetylation in regulating RAR-beta2 expression.
- To identify potential strategies for restoring ATRA sensitivity in melanoma.
Main Methods:
- Analysis of RAR-beta2 gene expression in melanoma and melanocytes.
- Assessment of DNA methylation patterns within the RAR-beta gene promoter.
- Evaluation of global and RARbeta-specific nucleosome repeat length (NRL).
- Measurement of histone H3 and H4 pan-acetylation within the RAR-beta gene promoter.
- Treatment with ATRA, phytochemicals, Trichostatin A, and 5-aza-2'-deoxycytidine (5-aza-dC).
Main Results:
- A correlation was observed between ATRA anti-proliferative activity and RAR-beta2 expression.
- No strict correlation was found between RAR-beta gene DNA methylation and its expression.
- Histone H3 and H4 pan-acetylation was higher in RAR-beta2 expressing cells.
- ATRA treatment increased H4 pan-acetylation in non-responsive cells.
- 5-aza-dC treatment reactivated RAR-beta2 expression and restored ATRA sensitivity in WM1366 melanoma cells.
Conclusions:
- Promoter methylation is responsible for RAR-beta2 silencing in a subset of melanoma cells.
- Histone H3 pan-acetylation appears to play a permissive role in RAR-beta2 gene expression.
- Reactivation of RAR-beta2 through demethylation could restore ATRA efficacy in melanoma treatment.
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