Related Experiment Video
Updated: Jun 13, 2026

Studying Cryptosporidium Infection in 3D Tissue-derived Human Organoid Culture Systems by Microinjection
Published on: September 14, 2019
Multisite study of cryptosporidiosis in children with diarrhea in India
Sitara Swarna Rao Ajjampur1, Farzana Begum Liakath, Arun Kannan
1Department of Gastrointestinal Sciences, Christian Medical College, Vellore 632004, India.
Insights
Cryptosporidium, a common cause of childhood diarrhea in India, was studied across multiple sites. Cryptosporidium hominis was the predominant species identified, with specific subgenotypes prevalent nationwide.
Area of Science:
- Medical Microbiology
- Infectious Diseases
- Public Health
Background:
- Cryptosporidium species are a significant cause of diarrheal illness in young children globally.
- Limited data exists on the molecular epidemiology of Cryptosporidium in India, particularly in hospitalized pediatric populations.
Purpose of the Study:
- To conduct the first multi-site molecular investigation of Cryptosporidium species and subgenotypes in children with diarrhea in India.
- To determine the prevalence and genetic diversity of Cryptosporidium in hospitalized children across different Indian regions.
Main Methods:
- Analysis of diarrheal stool samples from hospitalized children (<5 years) in Delhi, Trichy, and Vellore.
- Utilized microscopy, PCR-restriction fragment length polymorphism (RFLP), and sequencing of SSU rRNA and Cpgp40/15 loci for species and subgenotype identification.
Main Results:
- Overall prevalence of cryptosporidial diarrhea was 2.7% (70/2,579 children), with 75% being under two years old.
- Cryptosporidium hominis was the most frequently identified species (59/67), with subgenotypes Ie, Ia, Ib, and Id found across all study sites.
- A novel Cryptosporidium parvum subgenotype, designated IIn, was discovered in Vellore.
Conclusions:
- Cryptosporidium hominis is the dominant species causing diarrhea in young Indian children.
- The study identified common and novel subgenotypes, contributing to the understanding of Cryptosporidium transmission dynamics in India.
- Environmental factors, such as hotter and drier weather, may correlate with increased Cryptosporidium positivity in specific regions like Delhi.
Abstract:
Cryptosporidium spp., a common cause of diarrhea in children, were investigated in the first multisite study in India. Diarrheal stools from hospitalized children aged <5 years from Delhi, Trichy, and Vellore were analyzed by microscopy, PCR-restriction fragment length polymorphism (RFLP), and/or sequencing at the small-subunit (SSU) rRNA and Cpgp40/15 loci for species determination and subgenotyping, respectively. Seventy of 2,579 (2.7%) children, 75% of whom were <2 years old, had cryptosporidial diarrhea as determined by microscopy. Genotyping and subgenotyping showed that Cryptosporidium hominis was the most commonly identified species (59/67 children), and subgenotypes Ie, Ia, Ib, and Id were common in all centers. A novel C. parvum subgenotype, IIn, was identified in Vellore. Meteorological analysis revealed a higher rate of cryptosporidial positivity during hotter and drier weather in Delhi.
Related Concept Videos
Giardiasis
Fungal Phylum Microsporidia
Bioavailability Study Design: Single Versus Multiple Dose Studies
Amebiasis
Bacterial Gastroenteritis
Cryptococcal Meningitis
