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Updated: Jun 13, 2026

Comparative Strategies for Ubiquitination Detection in Mammalian Cell Lysates Using SMAD2/SMURF2 as a Model
Published on: April 17, 2026
ErbB2 trafficking and degradation associated with K48 and K63 polyubiquitination
Corina Marx1, Jason M Held, Bradford W Gibson
1Buck Institute for Age Research, Novato, California 94945, USA.
Abstract:
The overexpressed ErbB2/HER2 receptor is a clinically validated cancer target whose surface localization and internalization mechanisms remain poorly understood. Downregulation of the overexpressed 185-kDa ErbB2 receptor is rapidly (2-6 hours) induced by the HSP90 chaperone inhibitor geldanamycin (GA), whereas its downregulation and lysosomal degradation are more slowly (24 hours) induced by the proteasome inhibitor bortezomib/PS341. In PS341-treated SK-BR-3 cells, overexpressed ErbB2 coprecipitates with the E3 ubiquitin ligase c-Cbl and also with the deubiquitinating enzyme USP9x; moreover, siRNA downregulation of USP9x enhances PS341-induced ErbB2 downregulation. Because polyubiquitin linkages via lysine 48 (K48) or 63 (K63) can differentially address proteins for 26S proteasomal degradation or endosome trafficking to the lysosome, multiple reaction monitoring (MRM)/mass spectrometry (MS) and polyubiquitin linkage-specific antibodies were used to quantitatively track K48-linked and K63-linked ErbB2 polyubiquitination following either GA or PS341 treatment of SK-BR-3 cells. MRM/MS revealed that unlike the rapid, modest (4-fold to 8-fold), and synchronous GA induction of K48 and K63 polyubiquitinated ErbB2, PS341 produces a dramatic (20-fold to 40-fold) sequential increase in polyubiquitinated ErbB2 consistent with K48 polyubiquitination followed by K63 editing. Fluorescence microscopic imaging confirmed that PS341, but not GA, induces colocalization of K48-linked and K63-linked polyubiquitin with perinuclear lysosome-sequestered ErbB2. Thus, ErbB2 surface overexpression and recycling seem to depend on its polyubiquitination and deubiquitination; as well, the contrasting effects of PS341 and GA on ErbB2 receptor localization, polyubiquitination, and degradation point to alternate cytoplasmic trafficking likely regulated by different K48 and K63 polyubiquitin editing mechanisms.
Insights
The HSP90 inhibitor geldanamycin (GA) and proteasome inhibitor bortezomib (PS341) differentially regulate ErbB2/HER2 ubiquitination and degradation. PS341 treatment leads to sequential K48 and K63 polyubiquitination and lysosomal degradation of ErbB2.
Area of Science:
- Oncology
- Molecular Biology
- Cell Biology
Background:
- ErbB2/HER2 is a key cancer target with poorly understood surface localization and internalization.
- HSP90 and proteasome inhibitors like GA and PS341 affect ErbB2 levels through distinct mechanisms.
Purpose of the Study:
- To investigate the differential effects of geldanamycin (GA) and bortezomib (PS341) on ErbB2/HER2 polyubiquitination and degradation pathways.
- To elucidate the roles of K48-linked and K63-linked polyubiquitin chains in regulating ErbB2 trafficking and lysosomal degradation.
Main Methods:
- Utilized multiple reaction monitoring (MRM)/mass spectrometry (MS) to quantify ErbB2 polyubiquitination.
- Employed polyubiquitin linkage-specific antibodies to track K48 and K63 linkages.
- Performed fluorescence microscopic imaging to assess protein colocalization.
Main Results:
- GA induced rapid, modest, and synchronous K48/K63 polyubiquitination of ErbB2.
- PS341 induced a dramatic, sequential increase in K48-linked followed by K63-linked polyubiquitination.
- PS341, but not GA, promoted colocalization of polyubiquitinated ErbB2 with lysosomes.
Conclusions:
- ErbB2 surface expression and recycling are dependent on its polyubiquitination and deubiquitination status.
- Distinct polyubiquitin editing mechanisms regulate ErbB2 cytoplasmic trafficking and degradation pathways.
- Targeting these ubiquitination pathways offers potential therapeutic strategies for ErbB2-overexpressing cancers.
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