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Analyzing Telomeric Protein-DNA Interactions Using Single-Molecule Magnetic Tweezers
Published on: August 30, 2024
TRF2/RAP1 and DNA-PK mediate a double protection against joining at telomeric ends
Oriane Bombarde1, Céline Boby, Dennis Gomez
1Institut de Pharmacologie et de Biologie Structurale, Toulouse, France.
Abstract:
DNA-dependent protein kinase (DNA-PK) is a double-strand breaks repair complex, the subunits of which (KU and DNA-PKcs) are paradoxically present at mammalian telomeres. Telomere fusion has been reported in cells lacking these proteins, raising two questions: how is DNA-PK prevented from initiating classical ligase IV (LIG4)-dependent non-homologous end-joining (C-NHEJ) at telomeres and how is the backup end-joining (EJ) activity (B-NHEJ) that operates at telomeres under conditions of C-NHEJ deficiency controlled? To address these questions, we have investigated EJ using plasmid substrates bearing double-stranded telomeric tracks and human cell extracts with variable C-NHEJ or B-NHEJ activity. We found that (1) TRF2/RAP1 prevents C-NHEJ-mediated end fusion at the initial DNA-PK end binding and activation step and (2) DNA-PK counteracts a potent LIG4-independent EJ mechanism. Thus, telomeres are protected against EJ by a lock with two bolts. These results account for observations with mammalian models and underline the importance of alternative non-classical EJ pathways for telomere fusions in cells.
Insights
Mammalian telomeres are protected from fusion by a two-part DNA-PK lock. TRF2/RAP1 prevents classical end-joining, while DNA-PK inhibits an alternative ligation pathway, ensuring telomere stability.
Area of Science:
- Molecular Biology
- Genetics
- Cell Biology
Background:
- DNA-dependent protein kinase (DNA-PK) is crucial for DNA double-strand break repair.
- KU and DNA-PKcs subunits of DNA-PK are found at mammalian telomeres, raising questions about their role.
- Telomere fusion occurs in cells lacking these DNA-PK subunits.
Purpose of the Study:
- Investigate how DNA-PK is prevented from initiating classical non-homologous end-joining (C-NHEJ) at telomeres.
- Determine how backup end-joining (B-NHEJ) at telomeres is controlled when C-NHEJ is deficient.
Main Methods:
- Utilized plasmid substrates with double-stranded telomeric tracks.
- Employed human cell extracts with varying C-NHEJ or B-NHEJ activity to study end-joining (EJ).
Main Results:
- TRF2/RAP1 complex inhibits C-NHEJ-mediated telomere end fusion at the DNA-PK binding and activation stage.
- DNA-PK actively counteracts a strong LIG4-independent EJ mechanism.
- Telomeres are protected from end-joining by a dual-lock system involving TRF2/RAP1 and DNA-PK.
Conclusions:
- The findings explain telomere protection mechanisms in mammalian cells.
- Alternative, non-classical EJ pathways are critical for preventing telomere fusions.
- This dual-lock system ensures telomere integrity and prevents aberrant end-joining.
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