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Inherent Dynamics Visualizer, an Interactive Application for Evaluating and Visualizing Outputs from a Gene Regulatory Network Inference Pipeline
Published on: December 7, 2021
NetRaVE: constructing dependency networks using sparse linear regression
A Phatak1, H Kiiveri, L H Clemmensen
1CSIRO Mathematical & Information Sciences, Private Bag 5, Wembley, WA, Australia.
Unlabelled:
NetRaVE is a small suite of R functions for generating dependency networks using sparse regression methods. Such networks provide an alternative to interpreting 'top n lists' of genes arising out of an analysis of microarray data, and they provide a means of organizing and visualizing the resulting information in a manner that may suggest relationships between genes.
Availability:
NetRaVE is freely available for academic use and has been tested in R 2.10.1 under Windows XP, Linux and Mac OS X.
Supplementary Information:
Supplementary data are available at Bioinformatics online.
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