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Published on: November 11, 2020
FASconCAT: Convenient handling of data matrices
Patrick Kück1, Karen Meusemann
1Zoologisches Forschungsmuseum Alexander Koenig, Adenauerallee 160, 53113 Bonn, Germany. patrick_kueck@web.de
FASconCAT is a user-friendly software tool that rapidly concatenates diverse sequence data into a single supermatrix. This phylogenetic analysis software supports multiple input and output formats, streamlining data preparation for evolutionary studies.
Area of Science:
- Bioinformatics
- Computational Biology
- Evolutionary Biology
Background:
- Phylogenetic analyses require integrated sequence data.
- Preparing diverse sequence data formats for phylogenetic software can be complex and time-consuming.
Purpose of the Study:
- To develop user-friendly software for concatenating various sequence data types into a unified supermatrix.
- To facilitate direct loading of concatenated data into popular phylogenetic analysis programs.
Main Methods:
- The software, FASconCAT, accepts FASTA, PHYLIP, and CLUSTAL input formats in a single run.
- It generates output files in FASTA, PHYLIP, or NEXUS formats, compatible with phylogenetic software.
- Provides data integrity checks, including gene range information, taxon checklists, and base composition analysis.
Main Results:
- FASconCAT efficiently concatenates multiple sequence files into a single supermatrix.
- It offers flexible output formats (FASTA, PHYLIP, NEXUS) and options for MrBayes commands and taxon name length.
- The software provides valuable data summaries and checks for nucleotide and structural sequence data.
Conclusions:
- FASconCAT simplifies and accelerates the data preparation process for phylogenetic analyses.
- Its versatility in handling various formats and providing detailed output enhances usability for researchers.
- The software is freely available and runs on UNIX and MS Windows systems.
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