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Updated: Jun 13, 2026

DNAzyme-dependent Analysis of rRNA 2’-O-Methylation
Published on: September 16, 2019
Yeast targets for mRNA methylation
Zsuzsanna Bodi1, James D Button, Donald Grierson
1School of Biosciences, Plant Sciences Division, University of Nottingham, Sutton Bonington, Loughborough LE12 5RD, UK.
Abstract:
N(6)-Methyladenosine (m(6)A) is a modified base present in the mRNA of all higher eukaryotes and in Saccharomyces cerevisiae, where there is an increase in m(6)A levels during sporulation. The methyltransferase, Ime4, is responsible for this modification and has a role in the initiation of meiosis. However, neither the function, nor the extent of distribution of this nucleotide modification is established. We demonstrate that in S. cerevisiae, substantial levels of internal adenosine methylation are present in the GpA context in mRNA from sporulating cells, which is consistent with the preferred methylation consensus of higher eukaryotes. Based upon our quantification data, every second transcript could contain one m(6)A during meiosis. As methylation is distributed across all mRNA size ranges, it is likely that m(6)A is not limited to a small population of messages. We developed a new antibody based method for identifying m(6)A containing messages, and using this method the transcripts of three key, early regulators of meiosis, IME1, IME2 and IME4 itself, were identified as being methylated. The position of m(6)A in IME2 was narrowed down to a region in the 3'-end. Methylation of these and other targets suggests mechanisms by which IME4 could control developmental choices leading to meiosis.
Insights
N(6)-Methyladenosine (m(6)A) is a widespread mRNA modification in yeast sporulation. This study identifies m(6)A in key meiotic genes, suggesting its regulatory role in yeast development.
Area of Science:
- Molecular Biology
- Epigenetics
- Yeast Genetics
Background:
- N(6)-Methyladenosine (m(6)A) is a prevalent mRNA modification in eukaryotes.
- m(6)A levels increase during sporulation in Saccharomyces cerevisiae.
- The methyltransferase Ime4 is linked to meiosis initiation, but its targets and m(6)A function remain unclear.
Purpose of the Study:
- To investigate the distribution and function of m(6)A during yeast sporulation.
- To identify specific mRNA targets of m(6)A methylation.
- To elucidate the role of m(6)A in regulating meiotic development.
Main Methods:
- Quantification of m(6)A levels in sporulating yeast mRNA.
- Development of an antibody-based method to detect m(6)A-containing transcripts.
- Analysis of m(6)A modification in key meiotic regulator genes (IME1, IME2, IME4).
Main Results:
- Substantial m(6)A levels were found in the GpA context in sporulating yeast mRNA.
- Approximately 50% of transcripts may contain m(6)A during meiosis, distributed across all mRNA sizes.
- Transcripts of IME1, IME2, and IME4 were identified as methylated, with m(6)A localized to the 3'-end of IME2.
Conclusions:
- m(6)A is a widespread mRNA modification in yeast meiosis, not limited to specific transcripts.
- Methylation of key meiotic genes suggests a regulatory role for m(6)A in controlling developmental pathways.
- IME4-mediated m(6)A modification likely influences developmental decisions leading to meiosis.
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