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A Restriction Enzyme Based Cloning Method to Assess the In vitro Replication Capacity of HIV-1 Subtype C Gag-MJ4 Chimeric Viruses
Published on: August 31, 2014
An unusual cluster of HIV-1 B/F recombinants in an Asian population
Ross K K Leung1, Fion N Y Fong, Thomas C C Au
1Hong Kong Bioinformatics Centre, The Chinese University of Hong Kong, Hong Kong, China.
Abstract:
We report the detection of multiple HIV strains in injection drug users (IDU) in Macao, which appear to be derived from subtypes F, G, and CRF12_BF. A total of 14 HIV-infected IDU samples were collected and examined. Direct sequencing was performed to obtain the gag, pol, and env fragments. The subtypes of individual viral sequences were determined using the REGA subtyping tool. The concatenated sequences were aligned with reference sequences retrieved from the Los Alamos National Laboratory HIV database. We found 11 unusual cases in Macao, which showed characteristics of CRF12_BF (n=2) and CRF14_BG (n=8), and one that could not be classified into an existing subtype/CRF, along with three cases of CRF01_AE. Interestingly, the sequences derived from subtypes BG and BF recombinants have not been previously reported in any other Asian cities. Another subtype, CRF14_BG, has also been introduced into Macao among the IDUs. In conclusion, human activity, including travel over long distances and injection drug usage have fueled the spread of HIV and have provided a platform for recombination, which may otherwise have taken years to happen.
Insights
Multiple HIV strains, including novel recombinants, were found in Macao injection drug users. These findings highlight the role of human behavior in the rapid spread and evolution of HIV strains.
Area of Science:
- Virology
- Epidemiology
Background:
- Human Immunodeficiency Virus (HIV) genetic diversity is a global health concern.
- Understanding HIV subtype distribution is crucial for effective prevention and treatment strategies.
Observation:
- Analysis of 14 HIV-infected injection drug users (IDU) in Macao revealed multiple HIV strains.
- Sequencing identified subtypes F, G, and CRF12_BF, with a notable prevalence of CRF12_BF (n=2) and CRF14_BG (n=8).
- Three cases of CRF01_AE were also detected, alongside one unclassifiable sequence.
Findings:
- Novel recombinant HIV strains, CRF12_BF and CRF14_BG, were identified in Macao IDUs.
- These specific BG and BF recombinant subtypes have not been previously reported in other Asian cities.
- CRF14_BG represents a new introduction of this subtype among the IDU population in Macao.
Implications:
- The findings suggest that long-distance travel and injection drug use facilitate rapid HIV spread and recombination.
- The emergence of new HIV strains underscores the need for enhanced surveillance and targeted interventions in vulnerable populations.
- This study provides critical insights into the molecular epidemiology of HIV in Macao and its potential implications for regional public health.
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