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Updated: Jun 13, 2026

Remote Magnetic Actuation of Micrometric Probes for in situ 3D Mapping of Bacterial Biofilm Physical Properties
Published on: May 2, 2014
Application of paramagnetically tagged molecules for magnetic resonance imaging of biofilm mass transport processes
B Ramanan1, W M Holmes, W T Sloan
1Department of Geographical and Earth Sciences, Gregory Building, University of Glasgow, Glasgow G12 8QQ, United Kingdom.
Abstract:
Molecules become readily visible by magnetic resonance imaging (MRI) when labeled with a paramagnetic tag. Consequently, MRI can be used to image their transport through porous media. In this study, we demonstrated that this method could be applied to image mass transport processes in biofilms. The transport of a complex of gadolinium and diethylenetriamine pentaacetic acid (Gd-DTPA), a commercially available paramagnetic molecule, was imaged both in agar (as a homogeneous test system) and in a phototrophic biofilm. The images collected were T(1) weighted, where T(1) is an MRI property of the biofilm and is dependent on Gd-DTPA concentration. A calibration protocol was applied to convert T(1) parameter maps into concentration maps, thus revealing the spatially resolved concentrations of this tracer at different time intervals. Comparing the data obtained from the agar experiment with data from a one-dimensional diffusion model revealed that transport of Gd-DTPA in agar was purely via diffusion, with a diffusion coefficient of 7.2 x 10(-10) m(2) s(-1). In contrast, comparison of data from the phototrophic biofilm experiment with data from a two-dimensional diffusion model revealed that transport of Gd-DTPA inside the biofilm was by both diffusion and advection, equivalent to a diffusion coefficient of 1.04 x 10(-9) m(2) s(-1). This technology can be used to further explore mass transport processes in biofilms, either by using the wide range of commercially available paramagnetically tagged molecules and nanoparticles or by using bespoke tagged molecules.
Insights
Magnetic resonance imaging (MRI) visualizes paramagnetic-tagged molecule transport in biofilms. This study imaged gadolinium diethylenetriamine pentaacetic acid (Gd-DTPA) transport, revealing diffusion and advection in biofilms.
Area of Science:
- Biophysics
- Microbiology
- Biotechnology
Background:
- Magnetic resonance imaging (MRI) enables visualization of molecules tagged with paramagnetic contrast agents.
- MRI is a valuable tool for studying transport phenomena in various media, including porous structures.
Purpose of the Study:
- To demonstrate the application of MRI for imaging mass transport processes within biofilms.
- To quantify the transport mechanisms (diffusion and advection) of a paramagnetic tracer in both homogeneous and biofilm environments.
Main Methods:
- Utilized a gadolinium and diethylenetriamine pentaacetic acid (Gd-DTPA) complex as a paramagnetic tracer.
- Performed MRI scans on agar phantoms and phototrophic biofilms to generate T(1)-weighted images.
- Applied a calibration protocol to convert T(1) parameter maps into spatially resolved concentration maps of Gd-DTPA.
Main Results:
- Transport of Gd-DTPA in agar followed a purely diffusive model with a diffusion coefficient of 7.2 x 10(-10) m(2) s(-1).
- Transport of Gd-DTPA within the phototrophic biofilm occurred via both diffusion and advection, with an effective diffusion coefficient of 1.04 x 10(-9) m(2) s(-1).
Conclusions:
- MRI is a viable technique for investigating mass transport in biofilms.
- The study successfully differentiated between diffusion-dominated and diffusion-advection transport mechanisms in biofilms using MRI.
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