Structural basis for the assembly and gate closure mechanisms of the Mycobacterium tuberculosis 20S proteasome

Dongyang Li1, Hua Li, Tao Wang

  • 1Department of Biology, Brookhaven National Laboratory, Upton, NY, USA.

The EMBO Journal
|May 13, 2010
PubMed

Insights

Mycobacterium tuberculosis proteasome assembly and gating mechanisms are revealed. Structural studies explain how this essential bacterial proteasome assembles and seals its gate, aiding survival against host immunity.

Area of Science:

  • Structural Biology
  • Microbiology
  • Biochemistry

Background:

  • Mycobacterium tuberculosis (Mtb) utilizes a proteasome system crucial for resisting host immune responses.
  • The assembly process and gating mechanism of the Mtb proteasome remain poorly understood.
  • Understanding these mechanisms is vital for developing novel therapeutic strategies against tuberculosis.

Purpose of the Study:

  • To elucidate the structural basis of Mtb proteasome assembly.
  • To determine the mechanism by which the Mtb proteasome gate is regulated.
  • To provide insights into the function of the Mtb proteasome in bacterial survival.

Main Methods:

  • Cryo-electron microscopy (cryo-EM) was employed to determine the structures of Mtb proteasome assembly intermediates.
  • X-ray crystallography was used to resolve the high-resolution structure of the Mtb proteasome.
  • Comparative structural analysis was performed to understand conformational changes during assembly and gating.

Main Results:

  • Structures of three Mtb proteasome assembly intermediates revealed key conformational changes during assembly.
  • The beta-subunit propeptide's inhibitory role in assembly was structurally explained.
  • The Mtb proteasome gate was found to be tightly sealed by seven identical peptides adopting three distinct conformations.

Conclusions:

  • The study provides the first detailed structural insights into the assembly pathway of the Mtb proteasome.
  • A novel gating mechanism involving identical peptides in multiple conformations was uncovered for the prokaryotic proteasome.
  • These findings lay the groundwork for understanding Mtb proteasome function and for targeting it therapeutically.

Related Concept Videos

The Proteasome Structure01:17

The Proteasome Structure

The ubiquitin-proteasome pathway is a well-known mechanism utilized by eukaryotic cells to remove cytoplasmic proteins that are misfolded, damaged, or no longer needed. In this pathway, the protein that needs to be eliminated undergoes a process called ubiquitination, where a chain of ubiquitin molecules is attached to the 48th lysine residue of the target protein. This ubiquitin modification helps the proteasome distinguish between a target protein and a healthy protein.
The proteasome is an...
Protein Complex Assembly02:41

Protein Complex Assembly

Proteins can form homomeric complexes with another unit of the same protein or heteromeric complexes with different types.  Most protein complexes self-assemble spontaneously via ordered pathways, while some proteins need assembly factors that guide their proper assembly. Despite the crowded intracellular environment, proteins usually interact with their correct partners and form functional complexes.
Many viruses self-assemble into a fully functional unit using the infected host cell to...
Protein Complex Assembly02:41

Protein Complex Assembly

Proteins can form homomeric complexes with another unit of the same protein or heteromeric complexes with different types.  Most protein complexes self-assemble spontaneously via ordered pathways, while some proteins need assembly factors that guide their proper assembly. Despite the crowded intracellular environment, proteins usually interact with their correct partners and form functional complexes.
Many viruses self-assemble into a fully functional unit using the infected host cell to...
The Proteasome02:18

The Proteasome

Eukaryotic cells can degrade proteins through several pathways. One of the most important amongst these is the ubiquitin-proteasome pathway. It helps the cell eliminate the misfolded, damaged, or unwarranted cytoplasmic proteins in a highly specific manner.
In this pathway, the target proteins are first tagged with small proteins called ubiquitin. A series of enzymes carry out the ubiquitination of the target proteins - E1 (ubiquitin-activating enzyme), E2 (ubiquitin-conjugating enzyme), and E3...
The Proteasome01:13

The Proteasome

Eukaryotic cells can degrade proteins through several pathways. One of the most important among these is the ubiquitin-proteasome pathway. It helps the cell eliminate the misfolded, damaged, or unwarranted cytoplasmic proteins in a highly specific manner.
In this pathway, the target proteins are first tagged with small proteins called ubiquitin. This involves participation of a series of enzymes including— E1 (ubiquitin-activating enzyme), E2 (ubiquitin-conjugating enzyme), and E3 (ubiquitin...
The Proteasome02:18

The Proteasome

Eukaryotic cells can degrade proteins through several pathways. One of the most important amongst these is the ubiquitin-proteasome pathway. It helps the cell eliminate the misfolded, damaged, or unwarranted cytoplasmic proteins in a highly specific manner.
In this pathway, the target proteins are first tagged with small proteins called ubiquitin. A series of enzymes carry out the ubiquitination of the target proteins - E1 (ubiquitin-activating enzyme), E2 (ubiquitin-conjugating enzyme), and E3...