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Published on: March 5, 2018
Structure of an apoptosome-procaspase-9 CARD complex
Shujun Yuan1, Xinchao Yu, Maya Topf
1Department of Physiology and Biophysics, Boston University School of Medicine, 700 Albany Street, Boston, MA 02118-2526, USA.
Insights
The apoptosome, crucial for programmed cell death, undergoes conformational changes during activation. This structural study reveals how Apaf-1 assembly enables procaspase-9 activation and explains mutation effects.
Area of Science:
- Molecular Biology
- Structural Biology
- Biochemistry
Background:
- Apaf-1 and cytochrome c form the apoptosome, activating procaspase-9 (pc-9) for apoptosis.
- Understanding apoptosome structure is key to deciphering cell death regulation.
Purpose of the Study:
- To determine the structure of the apoptosome-pc-9 CARD complex.
- To elucidate the conformational changes involved in pc-9 activation.
Main Methods:
- Site-directed thrombinolysis to remove pc-9 catalytic domains.
- Cryo-electron microscopy to determine the structure at ~9.5 Å resolution.
Main Results:
- A structural model of the apoptosome-pc-9 CARD complex was generated.
- Apaf-1 features tandem beta-propellers with docked cytochrome c.
- Apaf-1 CARDs transition from disordered to ordered upon pc-9 binding, forming a disk structure.
Conclusions:
- The study reveals conformational changes in Apaf-1 assembly critical for pc-9 activation.
- The model explains the impact of NOD mutations on the apoptosome's central hub.
Abstract:
Apaf-1 coassembles with cytochrome c to form the apoptosome, which then binds and activates procaspase-9 (pc-9). We removed pc-9 catalytic domains from the holoapoptosome by site-directed thrombinolysis. A structure of the resulting apoptosome-pc-9 CARD complex was then determined at approximately 9.5 A resolution. In our model, the central hub is constructed like other AAA+ protein rings but also contains novel features. At higher radius, the regulatory region of each Apaf-1 is comprised of tandem seven and eight blade beta-propellers with cytochrome c docked between them. Remarkably, Apaf-1 CARDs are disordered in the ground state. During activation, each Apaf-1 CARD interacts with a pc-9 CARD and these heterodimers form a flexibly tethered "disk" that sits above the central hub. When taken together, the data reveal conformational changes during Apaf-1 assembly that allow pc-9 activation. The model also provides a plausible explanation for the effects of NOD mutations that have been mapped onto the central hub.
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