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A High Resolution Method to Monitor Phosphorylation-dependent Activation of IRF3
Published on: January 24, 2016
Protein kinase R contributes to immunity against specific viruses by regulating interferon mRNA integrity
Oliver Schulz1, Andreas Pichlmair, Jan Rehwinkel
1Immunobiology Laboratory, Cancer Research UK, London Research Institute, London WC2A 3PX, UK.
Abstract:
Cytosolic viral RNA recognition by the helicases RIG-I and MDA5 is considered the major pathway for IFN-alpha/beta induction in response to RNA viruses. However, other cytoplasmic RNA sensors, including the double-stranded RNA-binding protein kinase R (PKR), have been implicated in IFN-alpha/beta production, although their relative contribution and mechanism have been unclear. Using cells expressing nonfunctional PKR or reduced levels of kinase, we show that PKR is required for production of IFN-alpha/beta proteins in response to a subset of RNA viruses including encephalomyocarditis, Theiler's murine encephalomyelitis, and Semliki Forest virus, but not influenza or Sendai virus. Surprisingly, although IFN-alpha/beta mRNA induction is largely normal in PKR-deficient cells, much of that mRNA lacks the poly(A) tail, indicating that its integrity is compromised. Our results suggest that PKR plays a nonredundant role in IFN-alpha/beta production in response to some but not all viruses, in part by regulating IFN-alpha/beta mRNA stability.
Insights
The double-stranded RNA-binding protein kinase R (PKR) is crucial for interferon-alpha/beta production against certain RNA viruses by maintaining interferon mRNA stability. This finding clarifies PKR's role in innate immunity beyond RIG-I and MDA5.
Area of Science:
- Immunology
- Virology
- Molecular Biology
Background:
- Interferon-alpha/beta (IFN-alpha/beta) induction is vital for antiviral defense.
- Cytosolic RNA sensors RIG-I and MDA5 are primary inducers of IFN-alpha/beta.
- The role of double-stranded RNA-binding protein kinase R (PKR) in this process remains incompletely understood.
Purpose of the Study:
- To elucidate the specific contribution and mechanism of PKR in IFN-alpha/beta production against RNA viruses.
- To determine if PKR acts redundantly or nonredundantly with other known RNA sensors.
Main Methods:
- Utilized cell lines with nonfunctional or reduced PKR levels.
- Assessed IFN-alpha/beta protein and mRNA production in response to various RNA viruses.
- Analyzed the integrity of IFN-alpha/beta mRNA, specifically its poly(A) tail.
Main Results:
- PKR is essential for IFN-alpha/beta production against encephalomyocarditis, Theiler's murine encephalomyelitis, and Semliki Forest viruses, but not influenza or Sendai virus.
- IFN-alpha/beta mRNA induction occurred normally in PKR-deficient cells, but a significant portion lacked poly(A) tails.
- PKR plays a nonredundant role in the stability of IFN-alpha/beta mRNA.
Conclusions:
- PKR is a critical regulator of IFN-alpha/beta production for a subset of RNA viruses.
- PKR's mechanism involves maintaining the stability of IFN-alpha/beta mRNA, impacting its poly(A) tail.
- This highlights a distinct pathway for innate immune response mediated by PKR.
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