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Updated: Jun 12, 2026

Oligopeptide Competition Assay for Phosphorylation Site Determination
Published on: May 18, 2017
Phosphorylation controls autoinhibition of cytoplasmic linker protein-170
Ho-Sup Lee1, Yulia A Komarova, Elena S Nadezhdina
1Department of Cell and Molecular Biology, Northwestern University Medical School, Chicago, IL 60611, USA.
Abstract:
Cytoplasmic linker protein (CLIP)-170 is a microtubule (MT) plus-end-tracking protein that regulates MT dynamics and links MT plus ends to different intracellular structures. We have shown previously that intramolecular association between the N and C termini results in autoinhibition of CLIP-170, thus altering its binding to MTs and the dynactin subunit p150(Glued) (J. Cell Biol. 2004: 166, 1003-1014). In this study, we demonstrate that conformational changes in CLIP-170 are regulated by phosphorylation that enhances the affinity between the N- and C-terminal domains. By using site-directed mutagenesis and phosphoproteomic analysis, we mapped the phosphorylation sites in the third serine-rich region of CLIP-170. A phosphorylation-deficient mutant of CLIP-170 displays an "open" conformation and a higher binding affinity for growing MT ends and p150(Glued) as compared with nonmutated protein, whereas a phosphomimetic mutant confined to the "folded back" conformation shows decreased MT association and does not interact with p150(Glued). We conclude that phosphorylation regulates CLIP-170 conformational changes resulting in its autoinhibition.
Insights
Phosphorylation controls the conformation of cytoplasmic linker protein (CLIP)-170, a microtubule plus-end regulator. This regulation alters CLIP-170
Area of Science:
- Cell Biology
- Molecular Biology
- Cytoskeleton Dynamics
Background:
- Cytoplasmic linker protein (CLIP)-170 is a key microtubule (MT) plus-end-tracking protein.
- CLIP-170 regulates MT dynamics and links MTs to intracellular structures.
- Previous work showed CLIP-170 autoinhibition via N- and C-terminal association, affecting MT and dynactin p150(Glued) binding.
Purpose of the Study:
- To investigate the role of phosphorylation in regulating CLIP-170 conformation and function.
- To identify specific phosphorylation sites on CLIP-170.
- To determine how phosphorylation affects CLIP-170 binding to MTs and p150(Glued).
Main Methods:
- Site-directed mutagenesis to create phosphorylation-deficient and phosphomimetic mutants.
- Phosphoproteomic analysis to map phosphorylation sites.
- Biochemical assays to assess binding affinities and conformational states.
Main Results:
- Phosphorylation enhances the affinity between CLIP-170's N- and C-terminal domains, promoting an autoinhibited conformation.
- Specific phosphorylation sites were identified in the third serine-rich region.
- A phosphorylation-deficient mutant adopted an "open" conformation with increased binding to MT ends and p150(Glued).
- A phosphomimetic mutant remained in a "folded back" conformation with reduced MT association and no p150(Glued) interaction.
Conclusions:
- Phosphorylation is a critical regulator of CLIP-170 conformation.
- Phosphorylation-induced conformational changes lead to CLIP-170 autoinhibition.
- This regulation modulates CLIP-170's interaction with microtubules and the dynactin complex.
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