Role of a PAS sensor domain in the Mycobacterium tuberculosis transcription regulator Rv1364c

Ravi Kumar Jaiswal1, G Manjeera, B Gopal

  • 1Molecular Biophysics Unit, Indian Institute of Science, Bangalore 560012, India.

Insights

The Mycobacterium tuberculosis regulator Rv1364c

Area of Science:

  • Molecular biology
  • Structural biology
  • Biochemistry

Background:

  • Rv1364c is a Mycobacterium tuberculosis transcriptional regulator controlling the stress response sigma factor sigma(F).
  • This protein possesses multiple domains, including a PAS domain, a phosphatase, a kinase, and an anti-anti-sigma factor domain.
  • Previous Small Angle X-ray Scattering (SAXS) data indicated Rv1364c exists as a homo-dimer in an elongated conformation.

Purpose of the Study:

  • To determine the crystal structure of the Rv1364c PAS domain.
  • To elucidate the structural basis for Rv1364c dimerization.
  • To investigate potential ligand-binding capabilities of the PAS domain.

Main Methods:

  • X-ray crystallography to determine the PAS domain structure.
  • Structural comparison with known PAS domains.

Main Results:

  • The crystal structure of the Rv1364c PAS domain was determined.
  • The structure provides a molecular basis for Rv1364c homo-dimerization.
  • The PAS domain exhibits features suggesting potential ligand binding.

Conclusions:

  • The Rv1364c PAS domain likely regulates anti-sigma activity through oligomerization.
  • Rv1364c function may be modulated by cellular signals or metabolic cues.
  • This structural insight contributes to understanding Mycobacterium tuberculosis gene regulation.

Related Concept Videos

RNA Polymerase II Accessory Proteins02:36

RNA Polymerase II Accessory Proteins

Proteins that regulate transcription can do so either via direct contact with RNA Polymerase or through indirect interactions facilitated by adaptors, mediators, histone-modifying proteins, and nucleosome remodelers. Direct interactions to activate transcription is seen in bacteria as well as in some eukaryotic genes. In these cases, upstream activation sequences are adjacent to the promoters, and the activator proteins interact directly with the transcriptional machinery. For example, in...
Bacterial RNA Polymerase00:43

Bacterial RNA Polymerase

Unlike eukaryotes, bacteria use a single RNA Polymerase (RNAP) to transcribe all genes. The different subunits of bacterial RNAPhave distinct functions. The multisubunit structure of the bacterial RNAP helps the enzyme to maintain catalytic function, facilitate assembly, interact with DNA and RNA, and self-regulate its activity.
In most genes, the transcription site is a single base present upstream of the coding sequence. Though RNAP is a catalytically efficient enzyme, it does not recognize...
Bacterial RNA Polymerase00:43

Bacterial RNA Polymerase

Unlike eukaryotes, bacteria use a single RNA Polymerase (RNAP) to transcribe all genes. The different subunits of bacterial RNAPhave distinct functions. The multisubunit structure of the bacterial RNAP helps the enzyme to maintain catalytic function, facilitate assembly, interact with DNA and RNA, and self-regulate its activity.
In most genes, the transcription site is a single base present upstream of the coding sequence. Though RNAP is a catalytically efficient enzyme, it does not recognize...
Prokaryotic Transcriptional Activators and Repressors01:58

Prokaryotic Transcriptional Activators and Repressors

The organization of prokaryotic genes in their genome is notably different from that of eukaryotes. Prokaryotic genes are organized, such that the genes for proteins involved in the same biochemical process or function are located together in groups. This group of genes, along with their regulatory elements, are collectively known as an operon. The functional genes in an operon are transcribed together to give a single strand of mRNA known as polycistronic mRNA.
Transcription of prokaryotic...
Prokaryotic Transcriptional Activators and Repressors01:58

Prokaryotic Transcriptional Activators and Repressors

The organization of prokaryotic genes in their genome is notably different from that of eukaryotes. Prokaryotic genes are organized, such that the genes for proteins involved in the same biochemical process or function are located together in groups. This group of genes, along with their regulatory elements, are collectively known as an operon. The functional genes in an operon are transcribed together to give a single strand of mRNA known as polycistronic mRNA.
Transcription of prokaryotic...
Regulation of Bacterial Virulence01:28

Regulation of Bacterial Virulence

Pathogenic bacteria employ a range of regulatory mechanisms to modulate the expression of virulence genes in response to environmental and host-derived signals. These mechanisms ensure that virulence factors are expressed only under favorable conditions, thereby optimizing infection and survival strategies.Mechanisms of Virulence RegulationKey regulatory strategies include:Two-Component Systems: These consist of a membrane-bound sensor kinase and a cytoplasmic response regulator. Environmental...