Related Experiment Video
Updated: Jun 12, 2026

Detection of Homologous Recombination Intermediates via Proximity Ligation and Quantitative PCR in Saccharomyces cerevisiae
Published on: September 11, 2022
Multiple Rad5 activities mediate sister chromatid recombination to bypass DNA damage at stalled replication forks
Eugen C Minca1, David Kowalski
1Department of Cancer Biology, Roswell Park Cancer Institute, Buffalo, NY 14263, USA.
Abstract:
DNA damage that blocks replication is bypassed in order to complete chromosome duplication and preserve cell viability and genome stability. Rad5, a PCNA polyubiquitin ligase and DNA-dependent ATPase in yeast, is orthologous to putative tumor suppressors and controls error-free damage bypass by an unknown mechanism. To identify the mechanism in vivo, we investigated the roles of Rad5 and analyzed the DNA structures that form during damage bypass at site-specific stalled forks present at replication origins. Rad5 mediated the formation of recombination-dependent, X-shaped DNA structures containing Holliday junctions between sister chromatids. Mutants lacking these damage-induced chromatid junctions were defective in resolving stalled forks, restarting replication, and completing chromosome duplication. Rad5 polyubiquitin ligase and ATPase domains both contributed to replication fork recombination. Our results indicate that multiple activities of Rad5 function coordinately with homologous recombination factors to enable replication template switch events that join sister chromatids at stalled forks and bypass DNA damage.
Insights
Rad5 protein facilitates DNA damage bypass by enabling sister chromatid recombination at stalled replication forks, ensuring genome stability and cell survival.
Area of Science:
- Molecular Biology
- Genetics
- Cell Biology
Background:
- DNA damage impedes replication, necessitating bypass mechanisms for cell viability and genome stability.
- Rad5 (a PCNA polyubiquitin ligase and DNA-dependent ATPase) in yeast is crucial for error-free DNA damage bypass, but its mechanism remains unclear.
- Rad5 is orthologous to human tumor suppressors, highlighting its importance in maintaining genomic integrity.
Purpose of the Study:
- To elucidate the in vivo mechanism by which Rad5 facilitates DNA damage bypass.
- To investigate the role of Rad5 in resolving stalled replication forks and completing chromosome duplication.
- To analyze the specific DNA structures formed during damage bypass.
Main Methods:
- Site-specific stalled replication forks were created at replication origins in yeast.
- DNA structures formed during damage bypass were analyzed in vivo.
- The function of Rad5's polyubiquitin ligase and ATPase domains in replication fork recombination was assessed.
Main Results:
- Rad5 mediated the formation of recombination-dependent, X-shaped DNA structures containing Holliday junctions between sister chromatids.
- Replication restart and chromosome duplication completion were impaired in mutants lacking these damage-induced chromatid junctions.
- Both the polyubiquitin ligase and ATPase domains of Rad5 were essential for replication fork recombination.
Conclusions:
- Rad5's multiple activities coordinate with homologous recombination factors to enable replication template switching at stalled forks.
- These template switch events join sister chromatids, facilitating DNA damage bypass.
- Rad5 plays a critical role in maintaining genome stability by resolving replication stress through recombination.
Related Concept Videos
Restarting Stalled Replication Forks
Restarting Stalled Replication Forks
Homologous Recombination
Homologous Recombination
DNA Damage can Stall the Cell Cycle
DNA Damage Can Stall the Cell Cycle

