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Updated: Jun 12, 2026

A Web Tool for Generating High Quality Machine-readable Biological Pathways

A Web Tool for Generating High Quality Machine-readable Biological Pathways

Published on: February 8, 2017

Web service catalogue for Biomedical Grid infrastructure.

M Garcia¹, J Karlsson, O Trelles

¹Department of Computer Architecture, University of Malaga, Spain.

Studies in Health Technology and Informatics

|June 15, 2010

Summary

This summary is machine-generated.

The Advancing Clinico-Genomics Trials on Cancer (ACGT) project developed a Grid platform for cancer clinical trials. This system enhances medical knowledge discovery and integrates sensitive biomedical data through a metadata catalog and secure service wrapping.

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Last Updated: Jun 12, 2026

A Web Tool for Generating High Quality Machine-readable Biological Pathways

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Published on: February 8, 2017

Biobank for Translational Medicine: Standard Operating Procedures for Optimal Sample Management

Biobank for Translational Medicine: Standard Operating Procedures for Optimal Sample Management

Published on: November 30, 2022

Area of Science:

Biomedicine
Bioinformatics
Computational Biology

Background:

Numerous services exist for biomedical challenges.
The Advancing Clinico-Genomics Trials on Cancer (ACGT) project aims to improve cancer clinical trials.
Integrating and discovering biomedical data is crucial for clinical trials.

Purpose of the Study:

To present a metadata catalog for knowledge-based discovery of biomedical services.
To introduce a software module for wrapping command-line programs as secure Grid services.
To facilitate the integration and composition of biomedical services for cancer clinical trials.

Main Methods:

Developed a Grid-based platform for biomedical data integration.
Created a metadata catalog for service discovery.
Implemented a software module to wrap existing command-line programs as secure Grid services.
Ensured the secure handling of sensitive information within the Grid service.

Main Results:

A functional Grid platform for cancer clinical trials.
A catalogue enabling knowledge-based discovery of service metadata.
A secure wrapper for command-line programs, enhancing service accessibility.
Improved integration and discovery of biomedical data for research.

Conclusions:

The ACGT platform enhances medical knowledge discovery in cancer clinical trials.
The developed catalogue and wrapper module facilitate service composition and data integration.
Securely handling sensitive biomedical data is achievable within a Grid environment.