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Updated: Jun 12, 2026

Assays for the Degradation of Misfolded Proteins in Cells
Published on: August 28, 2016
The ribonucleotide reductase inhibitor, Sml1, is sequentially phosphorylated, ubiquitylated and degraded in response
Bethany L Andreson1, Amitabha Gupta, Bilyana P Georgieva
1Department of Biological Sciences, Columbia University, New York, NY 10027, USA.
Abstract:
Regulation of ribonucleotide reductase (RNR) is important for cell survival and genome integrity in the face of genotoxic stress. The Mec1/Rad53/Dun1 DNA damage response kinase cascade exhibits multifaceted controls over RNR activity including the regulation of the RNR inhibitor, Sml1. After DNA damage, Sml1 is degraded leading to the up-regulation of dNTP pools by RNR. Here, we probe the requirements for Sml1 degradation and identify several sites required for in vivo phosphorylation and degradation of Sml1 in response to DNA damage. Further, in a strain containing a mutation in Rnr1, rnr1-W688G, mutation of these sites in Sml1 causes lethality. Degradation of Sml1 is dependent on the 26S proteasome. We also show that degradation of phosphorylated Sml1 is dependent on the E2 ubiquitin-conjugating enzyme, Rad6, the E3 ubiquitin ligase, Ubr2, and the E2/E3-interacting protein, Mub1, which form a complex previously only implicated in the ubiquitylation of Rpn4.
Insights
DNA damage triggers the degradation of the RNR inhibitor Sml1, crucial for cell survival. This study identifies key phosphorylation sites and proteasomal pathways essential for Sml1 regulation and genome stability.
Area of Science:
- Molecular Biology
- Cellular Biology
- Genetics
Background:
- Ribonucleotide reductase (RNR) activity is tightly regulated to maintain genome integrity during genotoxic stress.
- The Mec1/Rad53/Dun1 kinase cascade controls RNR, including the RNR inhibitor Sml1.
- DNA damage induces Sml1 degradation, increasing dNTP pools via RNR.
Purpose of the Study:
- To investigate the molecular requirements for Sml1 degradation following DNA damage.
- To identify specific phosphorylation sites on Sml1 critical for its in vivo regulation.
- To elucidate the ubiquitylation and proteasomal pathways involved in Sml1 turnover.
Main Methods:
- Site-directed mutagenesis to identify critical phosphorylation sites on Sml1.
- Analysis of Sml1 degradation in response to DNA damage using mutant strains.
- Investigating the role of the 26S proteasome, E2/E3 ligases (Rad6, Ubr2), and Mub1 in Sml1 degradation.
Main Results:
- Several in vivo phosphorylation sites on Sml1 were identified as essential for its degradation after DNA damage.
- Mutating these sites in Sml1 leads to lethality in conjunction with an rnr1-W688G mutation.
- Sml1 degradation is dependent on the 26S proteasome, the E2 enzyme Rad6, the E3 ligase Ubr2, and Mub1.
Conclusions:
- Sml1 degradation is a critical DNA damage response pathway regulated by specific phosphorylation events.
- The Rad6/Ubr2/Mub1 complex plays a key role in the ubiquitylation and proteasomal degradation of phosphorylated Sml1.
- Understanding Sml1 regulation is vital for maintaining cell survival and genome stability under genotoxic stress.
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