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Updated: Jun 12, 2026

Site-specific Bacterial Chromosome Engineering: ΦC31 Integrase Mediated Cassette Exchange (IMCE)
Published on: March 16, 2012
Chromosomally encoded blaCMY-2 located on a novel SXT/R391-related integrating conjugative element in a Proteus
Sohei Harada1, Yoshikazu Ishii, Tomoo Saga
1Department of Microbiology and Infectious Diseases, School of Medicine, Faculty of Medicine, Toho University, Omori-nishi, Ota-ku, 143-8540 Tokyo, Japan.
Abstract:
Integrating conjugative elements (ICEs) are mobile genetic elements that can transfer from the chromosome of a host to the chromosome of a new host through the process of excision, conjugation, and integration. Although SXT/R391-related ICEs, originally demonstrated in Vibrio cholerae O139 isolates, have become prevalent among V. cholerae isolates in Asia, the prevalence of the ICEs among gram-negative bacteria other than Vibrio spp. remains unknown. In addition, SXT/R391-related ICEs carrying genes conferring resistance to extended-spectrum cephalosporins have never been described. Here we carried out a genetic analysis of a cefoxitin-resistant Proteus mirabilis clinical isolate, TUM4660, which revealed the presence of a novel SXT/R391-related ICE, ICEPmiJpn1. ICEPmiJpn1 had a core genetic structure showing high similarity to that of R391 and carried xis and int genes completely identical to those of R391, while an IS10-mediated composite transposon carrying bla(CMY-2) was integrated into the ICE. A nucleotide sequence identical to the 3' part of ISEcp1 was located upstream of the bla(CMY-2) gene, and other genes observed around bla(CMY-2) in earlier studies were also present. Furthermore, the nucleotide sequences of hot spot 2 and hot spot 4 in ICEPmiJpn1 showed high similarity to that of hot spot 2 in SXT(MO10) and with a part of the nucleotide sequence found in P. mirabilis ATCC 29906, respectively. ICEPmiJpn1 was successfully transferred to Escherichia coli, Klebsiella pneumoniae, Salmonella enterica serovar Typhimurium, and Citrobacter koseri in conjugation experiments. These observations suggest that ICEs may contribute to the dissemination of antimicrobial resistance genes among clinically relevant Enterobacteriaceae, which warrants careful observation of the prevalence of ICEs, including SXT/R391-related ICEs.
Insights
A novel mobile genetic element, ICEPmiJpn1, was discovered in Proteus mirabilis. This integrating conjugative element (ICE) carries antibiotic resistance genes and can transfer between different bacteria, potentially spreading resistance.
Area of Science:
- Microbiology
- Genetics
- Molecular Biology
Background:
- Integrating conjugative elements (ICEs) are mobile genetic elements capable of horizontal gene transfer.
- SXT/R391-related ICEs are prevalent in Vibrio cholerae but their presence in other Gram-negative bacteria is largely unknown.
- The carriage of extended-spectrum cephalosporin resistance genes by SXT/R391-related ICEs has not been previously reported.
Purpose of the Study:
- To investigate the prevalence and characteristics of ICEs in Gram-negative bacteria beyond Vibrio spp.
- To identify novel ICEs and analyze their genetic structure and potential for antibiotic resistance gene dissemination.
- To determine the transferability of a newly identified ICE among clinically relevant bacterial species.
Main Methods:
- Genetic analysis of a cefoxitin-resistant Proteus mirabilis clinical isolate (TUM4660).
- Sequencing and comparative analysis of the novel ICE, designated ICEPmiJpn1.
- Conjugation experiments to assess the transferability of ICEPmiJpn1 to recipient bacteria.
Main Results:
- Identification and characterization of a novel SXT/R391-related ICE, ICEPmiJpn1, in P. mirabilis.
- ICEPmiJpn1 possesses a core structure similar to R391 and harbors a composite transposon carrying the bla(CMY-2) gene, conferring cephalosporin resistance.
- ICEPmiJpn1 was successfully transferred to Escherichia coli, Klebsiella pneumoniae, Salmonella enterica serovar Typhimurium, and Citrobacter koseri.
Conclusions:
- ICEs, including SXT/R391-related elements, can carry and disseminate antimicrobial resistance genes among Enterobacteriaceae.
- The discovery of ICEPmiJpn1 highlights the potential role of ICEs in the spread of antibiotic resistance in clinical settings.
- Further surveillance of ICE prevalence is crucial for understanding and combating antimicrobial resistance.
Related Concept Videos
Antibiotic Selection
Mechanism of Conjugation
Transposons
Plasmids

