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Updated: Jun 12, 2026

Proximity Ligand Assay to Localize Proteins in DNA Damage Sites
Published on: August 2, 2024
The DNA damage repair protein Ku70 interacts with FOXO4 to coordinate a conserved cellular stress response
Arjan B Brenkman1, Niels J F van den Broek, Peter L J de Keizer
1Department of Physiological Chemistry, University Medical Centre Utrecht, Utrecht, The Netherlands. a.b.brenkman@umcutrecht.nl
Abstract:
In this study, we searched for proteins regulating the tumor suppressor and life-span regulator FOXO4. Through an unbiased tandem-affinity purification strategy combined with mass spectrometry, we identified the heterodimer Ku70/Ku80 (Ku), a DNA double-strand break repair component. Using biochemical interaction studies, we found Ku70 to be necessary and sufficient for the interaction. FOXO4 mediates its tumor-suppressive function in part through transcriptional regulation of the cell cycle arrest p27(kip1) gene. Immunoblotting, luciferase reporter assays, and flow cytometry showed that Ku70 inhibited FOXO4-mediated p27(kip1) transcription and cell cycle arrest induction by >40%. In contrast, Ku70 RNAi but not control RNAi significantly increased p27(kip1) transcription. In addition, in contrast to wild-type mouse embryonic stem (ES) cells, Ku70(-/-) ES cells showed significantly increased FOXO activity, which was rescued by Ku70 reexpression. Immunofluorescence studies demonstrated that Ku70 sequestered FOXO4 in the nucleus. Interestingly, the Ku70-FOXO4 interaction stoichiometry followed a nonlinear dose-response curve by hydrogen peroxide-generated oxidative stress. Low levels of oxidative stress increased interaction stoichiometry up to 75%, peaking at 50 μM, after which dissociation occurred. Because the Ku70 ortholog in the roundworm Caenorhabditis elegans was shown to regulate life span involving C. elegans FOXO, our findings suggest a conserved critical Ku70 role for FOXO function toward coordination of a survival program, regulated by the magnitude of oxidative damage.
Insights
The DNA repair protein Ku70 binds the tumor suppressor FOXO4, inhibiting its function. Oxidative stress modulates this interaction, suggesting a conserved role for Ku70 in regulating FOXO-mediated survival pathways.
Area of Science:
- Molecular Biology
- Cell Biology
- Genetics
Background:
- FOXO4 is a critical tumor suppressor and life-span regulator.
- FOXO4 controls cell cycle arrest via p27(kip1) gene transcription.
- DNA double-strand break repair proteins are potential regulators of FOXO4.
Purpose of the Study:
- Identify proteins that regulate the tumor suppressor FOXO4.
- Investigate the role of Ku70 in FOXO4-mediated cellular processes.
- Determine the impact of oxidative stress on the Ku70-FOXO4 interaction.
Main Methods:
- Tandem-affinity purification and mass spectrometry to identify interacting proteins.
- Biochemical interaction studies, immunoblotting, luciferase reporter assays, and flow cytometry.
- Analysis of wild-type and Ku70 knockout mouse embryonic stem cells and immunofluorescence.
Main Results:
- Ku70/Ku80 (Ku) heterodimer identified as a FOXO4-interacting protein, with Ku70 being essential.
- Ku70 inhibits FOXO4-mediated p27(kip1) transcription and cell cycle arrest.
- Ku70 sequesters FOXO4 in the nucleus, and this interaction is modulated by oxidative stress levels.
Conclusions:
- Ku70 acts as a negative regulator of FOXO4's tumor-suppressive functions.
- The Ku70-FOXO4 interaction is dynamically regulated by oxidative stress.
- Findings suggest a conserved role for Ku70 in coordinating FOXO-mediated survival responses to oxidative damage.
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