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Updated: Jun 11, 2026

Targeted RNA Sequencing Assay to Characterize Gene Expression and Genomic Alterations
Published on: August 4, 2016
Targeted exon sequencing by in-solution hybrid selection
Brendan Blumenstiel1, Kristian Cibulskis, Sheila Fisher
1Broad Institute, Cambridge, Massachusetts, USA.
Abstract:
This unit describes a protocol for the targeted enrichment of exons from randomly sheared genomic DNA libraries using an in-solution hybrid selection approach for sequencing on an Illumina Genome Analyzer II. The steps for designing and ordering a hybrid selection oligo pool are reviewed, as are critical steps for performing the preparation and hybrid selection of an Illumina paired-end library. Critical parameters, performance metrics, and analysis workflow are discussed.
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