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Updated: Jun 11, 2026

Continuous Fluorescence-Based Endonuclease-Coupled DNA Methylation Assay to Screen for DNA Methyltransferase Inhibitors
Published on: August 5, 2022
DNMT3B7, a truncated DNMT3B isoform expressed in human tumors, disrupts embryonic development and accelerates
Mrinal Y Shah1, Aparna Vasanthakumar, Natalie Y Barnes
1Section of Hematology/Oncology, Department of Medicine, The University of Chicago, Chicago, Illinois 60637-1470, USA.
Abstract:
Epigenetic changes are among the most common alterations observed in cancer cells, yet the mechanism by which cancer cells acquire and maintain abnormal DNA methylation patterns is not understood. Cancer cells have an altered distribution of DNA methylation and express aberrant DNA methyltransferase 3B transcripts, which encode truncated proteins, some of which lack the COOH-terminal catalytic domain. To test if a truncated DNMT3B isoform disrupts DNA methylation in vivo, we constructed two lines of transgenic mice expressing DNMT3B7, a truncated DNMT3B isoform commonly found in cancer cells. DNMT3B7 transgenic mice exhibit altered embryonic development, including lymphopenia, craniofacial abnormalities, and cardiac defects, similar to Dnmt3b-deficient animals, but rarely develop cancer. However, when DNMT3B7 transgenic mice are bred with Emicro-Myc transgenic mice, which model aggressive B-cell lymphoma, DNMT3B7 expression increases the frequency of mediastinal lymphomas in Emicro-Myc animals. Emicro-Myc/DNMT3B7 mediastinal lymphomas have more chromosomal rearrangements, increased global DNA methylation levels, and more locus-specific perturbations in DNA methylation patterns compared with Emicro-Myc lymphomas. These data represent the first in vivo modeling of cancer-associated DNA methylation changes and suggest that truncated DNMT3B isoforms contribute to the redistribution of DNA methylation characterizing virtually every human tumor.
Insights
Truncated DNA methyltransferase 3B (DNMT3B) isoforms contribute to abnormal DNA methylation in cancer. Modeling this in mice reveals how these changes promote lymphoma development and chromosomal instability.
Area of Science:
- Epigenetics
- Cancer Biology
- Genetics
Background:
- Epigenetic alterations, particularly aberrant DNA methylation, are hallmarks of cancer.
- The precise mechanisms by which cancer cells establish and maintain abnormal DNA methylation patterns remain unclear.
- Cancer cells often express truncated DNA methyltransferase 3B (DNMT3B) transcripts encoding proteins lacking catalytic activity.
Purpose of the Study:
- To investigate the in vivo role of a cancer-associated truncated DNMT3B isoform (DNMT3B7) in DNA methylation disruption and cancer development.
- To model cancer-associated epigenetic changes using transgenic mice.
Main Methods:
- Generation of transgenic mice expressing the DNMT3B7 isoform.
- Phenotypic analysis of DNMT3B7 transgenic mice, including embryonic development and cancer incidence.
- Breeding DNMT3B7 transgenic mice with Emicro-Myc transgenic mice (modeling B-cell lymphoma).
- Comparative analysis of lymphoma characteristics, including chromosomal rearrangements and DNA methylation patterns.
Main Results:
- DNMT3B7 transgenic mice displayed developmental abnormalities but rarely developed cancer spontaneously.
- Co-expression of DNMT3B7 with Emicro-Myc oncogene significantly increased the frequency of mediastinal lymphomas.
- Lymphomas from Emicro-Myc/DNMT3B7 mice exhibited increased chromosomal rearrangements and global DNA methylation levels.
- Locus-specific DNA methylation patterns were perturbed in Emicro-Myc/DNMT3B7 lymphomas compared to Emicro-Myc lymphomas.
Conclusions:
- Truncated DNMT3B isoforms can disrupt DNA methylation patterns in vivo.
- DNMT3B7 contributes to lymphomagenesis in a relevant cancer model.
- These findings provide the first in vivo evidence that truncated DNMT3B isoforms promote cancer-associated DNA methylation redistribution.
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