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Updated: Jun 11, 2026

Realistic Membrane Modeling Using Complex Lipid Mixtures in Simulation Studies
Published on: September 1, 2023
Detailed molecular dynamics simulations of a model NaPSS in water
Jan-Michael Y Carrillo1, Andrey V Dobrynin
1Polymer Program, Institute of Materials Science and Department of Physics, University of Connecticut, Storrs, Connecticut 06269, USA.
Abstract:
Hydrophobic polyelectrolytes are known to form necklace-like structures of dense beads connected by strings of monomers. This structure appears as a result of optimization of the electrostatic and short-range interactions. To elucidate the effect of counterion condensation and solvent on polyelectrolyte conformations, we performed two sets of molecular dynamics simulations of model poly(styrene)-co-styrene sodium sulfonate (NaPSS) chains with the degree of polymerization N = 16-64 and fraction of charged monomers f = 0.25-1 in aqueous solutions: (1) water molecules were considered explicitly using the TIP3P-PME model and (2) water molecules were modeled as a dielectric continuum with the dielectric constant 77.73. Our simulations showed that with increasing fraction of sulfonated groups f a polystyrene sulfonate chain adopts an elongated conformation. There is a transition between collapsed and elongated states which is manifested in the change of the scaling dependence of the chain size on the degree of polymerization. The effect of the water-ion interactions on counterion condensation was analyzed by comparing the radial distribution functions between the sulfonated groups and counterions for chains with different f values. In the case of the collapsed NaPSS chains, it was found that ionized groups are located at the globular surface.

