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OWL2Perl: creating Perl modules from OWL class definitions.

Edward Kawas1, Mark D Wilkinson

  • 1Heart + Lung Institute at St. Paul's Hospital, Vancouver, BC, Canada. edward.kawas@gmail.com

Bioinformatics (Oxford, England)
|July 15, 2010
PubMed
Summary
This summary is machine-generated.

This study introduces OWL2Perl, a framework enabling Perl to utilize Web Ontology Language (OWL) ontologies. This facilitates the creation of compliant Resource Description Framework (RDF) data for the Semantic Web in life sciences.

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Area of Science:

  • Bioinformatics
  • Computational Biology
  • Semantic Web Technologies

Background:

  • Limited support for OWL ontologies in Perl hinders Semantic Web adoption in life sciences.
  • The Semantic Web is crucial for data integration and knowledge discovery in Healthcare and Life Sciences.

Purpose of the Study:

  • To present a Perl framework for generating Perl modules from OWL Class definitions.
  • To enable the creation of Resource Description Framework (RDF) data compliant with OWL models using Perl.

Main Methods:

  • Developed a Perl framework that parses OWL Class definitions.
  • Generated Perl modules that represent OWL Class structures.
  • Utilized generated modules for creating RDF data.

Main Results:

  • Successfully generated Perl modules from OWL Class definitions.
  • Demonstrated the capability to create OWL-compliant RDF data using the generated Perl modules.
  • Provided a practical solution for integrating OWL ontologies within Perl-based applications.

Conclusions:

  • The OWL2Perl framework significantly enhances Perl's utility for Semantic Web applications in life sciences.
  • Enables seamless integration of OWL ontologies for RDF data generation.
  • Addresses the limited support for OWL in Perl, promoting wider adoption of Semantic Web technologies.