Adult stem cells exhibit global suppression of RNA polymerase II serine-2 phosphorylation

Rasmus Freter1, Masatake Osawa, Shin-Ichi Nishikawa

  • 1Ludwig Institute for Cancer Research, Nuffield Department of Clinical Medicine, University of Oxford, United Kingdom. rasmus.freter@ludwig.ox.ac.uk

Insights

Adult stem cells conserve energy and protect themselves from damage by pausing mRNA transcription. This quiescent state, characterized by the absence of RNA polymerase II phosphorylation, is a conserved feature across various stem cell types.

Area of Science:

  • Cell Biology
  • Molecular Biology
  • Stem Cell Biology

Background:

  • Adult stem cells are crucial for tissue repair and homeostasis.
  • Their quiescent state, a reversible cell cycle arrest, is poorly understood.
  • Previous work indicated downregulated housekeeping gene expression in melanocyte stem cells (MelSCs).

Purpose of the Study:

  • To investigate the molecular mechanisms of adult stem cell quiescence.
  • To determine if suppressed mRNA transcription is a general characteristic of adult stem cells.
  • To explore the role of RNA polymerase II (RNApII) and its associated kinases in stem cell quiescence.

Main Methods:

  • Utilized antibodies against phosphorylated RNA polymerase II (RNApII) to assess transcriptional activity.
  • Examined RNApII phosphorylation status in various adult stem cell types (MelSCs, keratinocytes, muscle, spermatogonia, hematopoietic stem cells).
  • Investigated the role of CDK9, an RNApII kinase, in stem cell function and survival.

Main Results:

  • Adult MelSCs and other tested adult stem cells showed an absence of productive mRNA transcription elongation.
  • RNApII was initialized but not actively elongating mRNA in quiescent stem cells.
  • CDK9, a key kinase for transcription elongation, was absent in adult MelSCs and other stem cells.
  • CDK9 inhibition enhanced the survival of cells deprived of survival factors.

Conclusions:

  • The absence of productive mRNA transcription is a conserved, specific, and early characteristic of adult stem cells.
  • This transcriptional quiescence may reduce metabolism and protect against cellular/genetic damage.
  • Identifying transcriptionally quiescent cells could lead to the discovery of stem cell-like phenotypes in various tissues, including tumors.

Related Concept Videos

Chromatin Modification in iPS Cells01:32

Chromatin Modification in iPS Cells

Chromatin modification alters gene expression; therefore, scientists can add histone-modifying enzymes, histone variants, and chromatin remodeling complexes to somatic cells to aid reprogramming into pluripotent stem (iPS) cells.
Compact chromatin makes reprogramming difficult. Enzymes, such as histone demethylases and acetyltransferases, are often added during reprogramming to loosen the chromatin, making the DNA more accessible to transcription factors. Molecules that inhibit histone...
Maintenance of the ES Cell State01:14

Maintenance of the ES Cell State

The cells of the blastocyst inner cell mass only remain pluripotent for a short time. This state of pluripotency and self-renewal can be maintained in embryonic stem (ES) cell culture by adding specific chemicals or growth factors to ensure the cells can continue dividing and later differentiate into different cell types. In some cases, the cells are grown on a feeder layer of differentiated cells, which provides the growth factors and extracellular matrix components necessary for stem cell...
RNA Polymerase II Accessory Proteins02:36

RNA Polymerase II Accessory Proteins

Proteins that regulate transcription can do so either via direct contact with RNA Polymerase or through indirect interactions facilitated by adaptors, mediators, histone-modifying proteins, and nucleosome remodelers. Direct interactions to activate transcription is seen in bacteria as well as in some eukaryotic genes. In these cases, upstream activation sequences are adjacent to the promoters, and the activator proteins interact directly with the transcriptional machinery. For example, in...
Transcription Initiation01:47

Transcription Initiation

Initiation is the first step of transcription in eukaryotes. Prokaryotic RNA Polymerase (RNAP) can bind to the template DNA and start transcribing. On the other hand, transcription in eukaryotes requires additional proteins, called transcription factors, to first bind to the promoter region in the DNA template. This binding helps recruit the specific RNAP that can assemble on the DNA and start transcription.
The promoters and enhancers and their accessory proteins allow tight regulation of...
Eukaryotic RNA Polymerases00:58

Eukaryotic RNA Polymerases

RNA Polymerase (RNAP) is conserved in all animals, with bacterial, archaeal, and eukaryotic RNAPs sharing significant sequence, structural, and functional similarities. Among the three eukaryotic RNAPs, RNA Polymerase II is most similar to bacterial RNAP in terms of both structural organization and folding topologies of the enzyme subunits. However, these similarities are not reflected in their mechanism of action.
All three eukaryotic RNAPs require specific transcription factors, of which the...
Abnormal Proliferation02:23

Abnormal Proliferation

Under normal conditions, most adult cells remain in a non-proliferative state unless stimulated by internal or external factors to replace lost cells. Abnormal cell proliferation is a condition in which the cell's growth exceeds and is uncoordinated with normal cells. In such situations, cell division persists in the same excessive manner even after cessation of the stimuli, leading to persistent tumors. The tumor arises from the damaged cells that replicate to pass the damage to the daughter...