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Updated: Jun 10, 2026

Toeprinting Analysis of Translation Initiation Complex Formation on Mammalian mRNAs
Published on: May 10, 2018
Human G3BP1 interacts with beta-F1-ATPase mRNA and inhibits its translation
Alvaro D Ortega1, Imke M Willers, Sandra Sala
1Departamento de Biología Molecular, Centro de Biología Molecular Severo Ochoa (CBMSO), CSIC-UAM, Centro de Investigación Biomédica en Red de Enfermedades Raras (CIBERER), ISCIII, Universidad Autónoma de Madrid, 28049 Madrid, Spain.
Abstract:
The post-transcriptional regulation of nuclear mRNAs that encode core components of mitochondria has relevant implications in cell physiology. The mRNA that encodes the catalytic subunit of the mitochondrial H(+)-ATP synthase subunit beta (ATP5B, beta-F1-ATPase) is localized in a large ribonucleoprotein (RNP) complex (beta-F1-RNP), which is subjected to stringent translational control during development and the cell cycle, and in carcinogenesis. Because downregulation of beta-F1-ATPase is a conserved feature of most prevalent human carcinomas, we have investigated the molecular composition of the human beta-F1-RNP. By means of an improved affinity-chromatography procedure and protein sequencing we have identified nine RNA-binding proteins (RNABPs) of the beta-F1-RNP. Immunoprecipitation assays of Ras-GAP SH3 binding protein 1 (G3BP1) and fluorescent in-situ hybridization of mRNA indicate a direct interaction of the endogenous G3BP1 with mRNA of beta-F1-ATPase (beta-F1 mRNA). RNA-bridged trimolecular fluorescence complementation (TriFC) assays confirm the interaction of G3BP1 with the 3'-UTR of beta-F1 mRNA in cytoplasmic RNA-granules. Confocal and high-resolution immunoelectron-microscopy experiments suggest that the beta-F1-RNP is sorted to the periphery of mitochondria. Molecular and functional studies indicate that the interaction of G3BP1 with beta-F1 mRNA inhibits its translation at the initiation level, supporting a role for G3BP1 in the glycolytic switch that occurs in cancer.
Insights
Researchers identified proteins regulating mitochondrial ATP synthase beta mRNA (ATP5B) translation. They found Ras-GAP SH3 binding protein 1 (G3BP1) interacts with ATP5B mRNA, inhibiting its translation and potentially contributing to cancer
Area of Science:
- Cell Biology
- Molecular Biology
- Biochemistry
Background:
- Post-transcriptional regulation of nuclear-encoded mitochondrial proteins is crucial for cell physiology.
- The mRNA for mitochondrial H(+)-ATP synthase subunit beta (ATP5B) forms a ribonucleoprotein complex (beta-F1-RNP) subject to translational control.
- Downregulation of ATP5B is common in human carcinomas, suggesting its regulatory mechanisms are relevant to cancer.
Purpose of the Study:
- To investigate the molecular composition of the human beta-F1-RNP.
- To identify RNA-binding proteins associated with ATP5B mRNA.
- To elucidate the role of these proteins in translational control and cancer.
Main Methods:
- Affinity chromatography and protein sequencing to identify RNA-binding proteins (RNABPs).
- Immunoprecipitation and fluorescent in-situ hybridization to confirm protein-mRNA interactions.
- RNA-bridged trimolecular fluorescence complementation (TriFC) and microscopy to localize interactions and complexes.
Main Results:
- Nine RNABPs were identified in the beta-F1-RNP.
- Endogenous Ras-GAP SH3 binding protein 1 (G3BP1) directly interacts with ATP5B mRNA.
- G3BP1 binds to the 3'-UTR of ATP5B mRNA within cytoplasmic RNA granules, inhibiting translation initiation.
- The beta-F1-RNP is localized to the mitochondrial periphery.
Conclusions:
- G3BP1 is a key regulator of ATP5B mRNA translation.
- G3BP1's inhibitory role in translation supports its involvement in the cancer-associated glycolytic switch.
- Understanding these regulatory mechanisms offers insights into cancer biology and potential therapeutic targets.
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