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Updated: Jun 10, 2026

Studying Cell Cycle-regulated Gene Expression by Two Complementary Cell Synchronization Protocols
Published on: June 6, 2017
Coordination between cell cycle progression and cell fate decision by the p53 and E2F1 pathways in response to DNA
Xiao-Peng Zhang1, Feng Liu, Wei Wang
1National Laboratory of Solid State Microstructure, Department of Physics, Nanjing University, Nanjing 210093, China.
Abstract:
After DNA damage, cells must decide between different fates including growth arrest, DNA repair, and apoptosis. Both p53 and E2F1 are transcription factors involved in the decision process. However, the mechanism for cross-talk between the p53 and E2F1 pathways still remains unclear. Here, we proposed a four-module kinetic model of the decision process and explored the interplay between these two pathways in response to ionizing radiation via computer simulation. In our model the levels of p53 and E2F1 separately exhibit pulsatile and switching behaviors. Upon DNA damage, p53 is first activated, whereas E2F1 is inactivated, leading to cell cycle arrest in the G(1) phase. We found that the ultimate decision between cell life and death is determined by the number of p53 pulses depending on the extent of DNA damage. For repairable DNA damage, the cell can survive and reenter the S phase because of the activation of E2F1 and inactivation of p53. For irreparable DNA damage, growth arrest is overcome by growth factors, and activated p53 and E2F1 cooperate to initiate apoptosis. We showed that E2F1 promotes apoptosis by up-regulating the proapoptotic cofactors of p53 and procaspases. It was also revealed that deregulated E2F1 by oncogene activation can make cells sensitive to DNA damage even in low serum medium. Our model consistently recapitulates the experimental observations of the intricate relationship between p53 and E2F1 in the DNA damage response. This work underscores the significance of E2F1 in p53-mediated cell fate decision and may provide clues to cancer therapy.
Insights
Cell fate decisions after DNA damage involve p53 and E2F1 pathways. The number of p53 pulses determines cell survival or apoptosis, with E2F1 playing a key role in this intricate process.
Area of Science:
- Cellular biology
- Molecular biology
- Systems biology
Background:
- Cells face critical fate decisions post-DNA damage, including growth arrest, repair, or apoptosis.
- Transcription factors p53 and E2F1 are crucial in this decision-making process.
- The precise cross-talk mechanisms between p53 and E2F1 pathways remain incompletely understood.
Purpose of the Study:
- To investigate the interplay between p53 and E2F1 pathways in response to DNA damage.
- To elucidate the role of these pathways in cell fate determination.
- To develop a kinetic model for simulating the DNA damage response.
Main Methods:
- Development of a four-module kinetic model.
- Computer simulations of the p53 and E2F1 pathways.
- Analysis of pathway dynamics in response to ionizing radiation.
Main Results:
- p53 and E2F1 levels exhibit distinct pulsatile and switching behaviors.
- DNA damage initially activates p53 and inactivates E2F1, causing G1 arrest.
- Cell fate (survival or apoptosis) is determined by the number of p53 pulses, influenced by DNA damage extent.
- E2F1 promotes apoptosis by upregulating proapoptotic factors and procaspases.
- Deregulation of E2F1 sensitizes cells to DNA damage.
Conclusions:
- The study highlights the critical role of E2F1 in p53-mediated cell fate decisions following DNA damage.
- The kinetic model successfully recapitulates experimental observations of the p53-E2F1 relationship.
- Findings offer potential insights into novel cancer therapeutic strategies targeting these pathways.
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