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Exploring Sequence Space to Identify Binding Sites for Regulatory RNA-Binding Proteins
Published on: August 9, 2019
UPF1 association with the cap-binding protein, CBP80, promotes nonsense-mediated mRNA decay at two distinct steps
Jungwook Hwang1, Hanae Sato, Yalan Tang
1Department of Biochemistry and Biophysics, School of Medicine and Dentistry, University of Rochester, Rochester, NY 14642, USA.
Abstract:
Nonsense-mediated mRNA decay (NMD) is an mRNA surveillance mechanism that in mammals generally occurs upon recognition of a premature termination codon (PTC) during a pioneer round of translation. This round involves newly synthesized mRNA that is bound at its 5' end by the cap-binding protein (CBP) heterodimer CBP80-CBP20. Here we show that precluding the binding of the NMD factor UPF1 to CBP80 inhibits NMD at two steps: the association of SMG1 and UPF1 with the two eukaryotic release factors (eRFs) during SURF complex formation at a PTC, and the subsequent association of SMG1 and UPF1 with an exon-junction complex. We also demonstrate that UPF1 binds PTC-containing mRNA more efficiently than the corresponding PTC-free mRNA in a way that is promoted by the UPF1-CBP80 interaction. A unifying model proposes a choreographed series of protein-protein interactions occurring on an NMD target.
Insights
Nonsense-mediated mRNA decay (NMD) is regulated by UPF1 binding to CBP80. Inhibiting this interaction blocks NMD at key steps, revealing a new model for mRNA surveillance.
Area of Science:
- Molecular Biology
- Genetics
- Cell Biology
Background:
- Nonsense-mediated mRNA decay (NMD) is a crucial surveillance pathway.
- NMD eliminates aberrant mRNAs with premature termination codons (PTCs).
- The pioneer round of translation and cap-binding protein complex (CBP80-CBP20) are involved in NMD.
Purpose of the Study:
- To investigate the role of UPF1 binding to CBP80 in NMD.
- To elucidate the mechanism by which UPF1 interacts with CBP80 during NMD.
- To understand how this interaction affects NMD complex formation.
Main Methods:
- Investigating the interaction between UPF1 and CBP80.
- Analyzing the impact of inhibiting UPF1-CBP80 binding on NMD.
- Studying the formation of SURF complexes and exon-junction complexes.
Main Results:
- Precluding UPF1 binding to CBP80 inhibits NMD at two critical steps.
- SMG1 and UPF1 association with eukaryotic release factors (eRFs) and exon-junction complexes is impaired.
- UPF1 binds PTC-containing mRNA more efficiently, a process promoted by the UPF1-CBP80 interaction.
Conclusions:
- The interaction between UPF1 and CBP80 is essential for efficient NMD.
- A model of choreographed protein-protein interactions governs NMD on target mRNAs.
- This study provides new insights into the regulation of mRNA surveillance.
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