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Updated: Jun 10, 2026

Spatial and Temporal Control of Murine Melanoma Initiation from Mutant Melanocyte Stem Cells
Published on: June 7, 2019
High frequency of p16(INK4A) promoter methylation in NRAS-mutated cutaneous melanoma
Anders Jonsson1, Rainer Tuominen, Eva Grafström
1Department of Oncology and Pathology, Cancer Center Karolinska, Karolinska Institutet/Karolinska University Hospital, Stockholm, Sweden.
Abstract:
The p16(INK4A) tumor suppressor is often deleted, or otherwise inactivated, in malignant melanoma. To investigate the loss of p16(INK4A) in greater detail, we analyzed 77 cutaneous melanoma metastases. Of these 56 retained at least one p16(INK4A) allele, and 21 had biallelic deletions. Using methylation-specific PCR, direct sequencing, and immunohistochemical methods, we analyzed p16(INK4A) promoter methylation, mutations, and protein expression, respectively. In addition, 14 corresponding primary tumors were analyzed for protein expression. Results were compared to clinicopathological parameters and previously obtained data regarding mutations in proto-oncogenes NRAS and BRAF. Results revealed that p16(INK4A) promoter methylation was present in 15 of 59 (25%) metastases; nonsynonymous mutations in 9 of 56 (16%) metastases; and protein expression in 12 of 67 (18%) metastases. Protein expression was lost during progression from primary to metastatic tumors, 71% (10 of 14) and 43% (6 of 14) being positive, respectively. However, the genetic and epigenetic alterations of p16(INK4A) observed could not explain the lack of p16(INK4A) protein in 27 metastases, indicating the presence of additional inactivating mechanisms for p16(INK4A). Interestingly, p16(INK4A) promoter methylation was significantly overrepresented in NRAS-mutated samples compared to NRAS wild-type samples (P=0.0004), indicating an association between these two events.
Insights
The p16(INK4A) tumor suppressor is frequently lost in melanoma. While promoter methylation and mutations contribute, other mechanisms also inactivate p16(INK4A), particularly in NRAS-mutated tumors.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- The p16(INK4A) tumor suppressor gene is frequently inactivated in malignant melanoma.
- Understanding the mechanisms of p16(INK4A) loss is crucial for melanoma research.
Purpose of the Study:
- To investigate the detailed mechanisms of p16(INK4A) inactivation in cutaneous melanoma metastases.
- To correlate p16(INK4A) alterations with clinicopathological parameters and oncogene mutations.
Main Methods:
- Analysis of 77 cutaneous melanoma metastases and 14 primary tumors.
- Utilized methylation-specific PCR, direct sequencing, and immunohistochemistry for p16(INK4A) analysis.
- Compared findings with NRAS and BRAF proto-oncogene mutation data.
Main Results:
- p16(INK4A) promoter methylation occurred in 25% of metastases, with nonsynonymous mutations in 16%.
- Protein expression was reduced in metastases compared to primary tumors (43% vs 71%).
- Observed genetic/epigenetic alterations did not fully explain p16(INK4A) loss in 27 metastases, suggesting additional mechanisms.
- p16(INK4A) promoter methylation was significantly associated with NRAS mutations (P=0.0004).
Conclusions:
- Melanoma progression involves loss of p16(INK4A) expression through multiple genetic, epigenetic, and potentially other mechanisms.
- NRAS mutations are linked to p16(INK4A) promoter methylation in melanoma.
- Further research is needed to elucidate the complete spectrum of p16(INK4A) inactivation pathways in melanoma.
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