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Updated: Jun 10, 2026

A Colorimetric Assay that Specifically Measures Granzyme B Proteolytic Activity: Hydrolysis of Boc-Ala-Ala-Asp-S-Bzl
Published on: November 28, 2014
Identification of the BCL2/adenovirus E1B-19K protein-interacting protein 2 (BNIP-2) as a granzyme B target during
Gina B Scott1, Paul A Bowles, Erica B Wilson
1Leeds Institute of Molecular Medicine, University of Leeds, St. James's University Hospital, UK.
Abstract:
Cytotoxic lymphocytes eliminate infected cells and tumours via the perforin-mediated delivery of pro-apoptotic serine proteases known as granzymes. Granzyme B triggers apoptosis via the cleavage of a repertoire of cellular proteins, leading to caspase activation and mitochondrial depolarization. A simple bioinformatics strategy identified a candidate granzyme B cleavage site in the widely expressed BNIP-2 (BCL2/adenovirus E1B-19K protein-interacting protein 2). Granzyme B cleaved recombinant BNIP-2 in vitro and endogenous BNIP-2 was cleaved during the NK (natural killer) cell-mediated killing of tumour cells. Cleavage required the site identified in the bioinformatics screen and was caspase-independent. Expression of either full-length BNIP-2 or a truncated molecule mimicking the granzyme B cleaved form was pro-apoptotic and led to the caspase-dependent cleavage of BNIP-2 at a site distinct from granzyme B cleavage. Inhibition of BNIP-2 expression did not affect the susceptibility to NK cell-mediated killing. Furthermore, target cells in which BID (BH3-interacting domain death agonist) expression was inhibited also remained highly susceptible to NK cell-mediated killing, revealing redundancy in the pro-apoptotic response to human cytotoxic lymphocytes. Such redundancy reduces the opportunity for escape from apoptosis induction and maximizes the chances of immune-mediated clearance of infected cells or tumour cells.
Insights
Cytotoxic lymphocytes use granzymes to induce apoptosis. Researchers found Granzyme B cleaves BNIP-2, a key protein in cell death, revealing a new pathway in immune responses.
Area of Science:
- Immunology
- Cell Biology
- Biochemistry
Background:
- Cytotoxic lymphocytes eliminate infected cells and tumors using granzymes.
- Granzyme B induces apoptosis by cleaving cellular proteins, activating caspases, and causing mitochondrial depolarization.
Purpose of the Study:
- To investigate the role of BNIP-2 (BCL2/adenovirus E1B-19K protein-interacting protein 2) in cytotoxic lymphocyte-mediated apoptosis.
- To identify and characterize Granzyme B cleavage sites in BNIP-2.
Main Methods:
- Bioinformatics analysis to predict Granzyme B cleavage sites in BNIP-2.
- In vitro cleavage assays using recombinant BNIP-2.
- Analysis of endogenous BNIP-2 cleavage during NK cell-mediated killing of tumor cells.
- Gene silencing and expression studies of BNIP-2 and BID (BH3-interacting domain death agonist).
Main Results:
- A candidate Granzyme B cleavage site was identified in BNIP-2 using bioinformatics.
- Granzyme B directly cleaved recombinant and endogenous BNIP-2 in a caspase-independent manner at the predicted site.
- Expression of BNIP-2 or its cleaved form induced apoptosis, with subsequent caspase-dependent cleavage at a different site.
- Inhibition of BNIP-2 or BID expression did not affect susceptibility to NK cell-mediated killing, indicating functional redundancy.
Conclusions:
- Granzyme B targets BNIP-2 for cleavage, contributing to the pro-apoptotic function of cytotoxic lymphocytes.
- Redundancy exists in the pro-apoptotic pathways activated by cytotoxic lymphocytes, involving proteins like BNIP-2 and BID.
- This redundancy enhances the efficiency of immune-mediated clearance of infected cells and tumors by minimizing escape routes.
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