Related Experiment Video
Updated: Jun 10, 2026

Scanning Transmission Electron Microscopy Tomography in Virology: 3D Imaging of High-pressure Frozen, Freeze-substituted Samples
Published on: August 6, 2025
Dengue virus-induced autophagosomes and changes in endomembrane ultrastructure imaged by electron tomography and
Shobha Gangodkar1, Preksha Jain, Nishikant Dixit
1Electron Microscopy Group, National Institute of Virology (ICMR), 20A Dr Ambedkar Road, Pune 411001, India.
Abstract:
The biogenesis events and formation of dengue virus (DENV) in the infected host cells remain incompletely understood. In the present study, we examined the ultrastructural changes associated with DENV-2 replication in three susceptible host cells, C6/36, Vero and SK Hep1, a cell line of human endothelial origin, using transmission electron microscopy, whole-mount grid-cell culture techniques and electron tomography (ET). The prominent feature in C6/36 cells was the formation of large perinuclear vacuoles with mature DENV particles, and on-grid whole-mount examination of the infected Vero cells showed different forms of DENV core structures associated with cellular membranes within 48 h after infection. Distinct multivesicular structures and prominent autophagic vesicles were seen in the infected SK Hep1 cells when compared with the other two cell lines. ET showed the three-dimensional organization of these vesicles as a continuous system. This is the first report of ET-based analysis of DENV-2 replication in a human endothelial cell line. These results further emphasizes the strong role played by intracellular host membranes-virus interactions in the biogenesis of DENV and strongly argues for the possibility of targeting compounds to block such structure formation as key anti-dengue agents.
Insights
Understanding dengue virus (DENV) replication is crucial. This study reveals how DENV-2 forms within host cells, highlighting the role of intracellular membranes and suggesting new anti-dengue therapeutic targets.
Area of Science:
- Virology
- Cell Biology
- Microscopy
Background:
- Dengue virus (DENV) biogenesis and formation within host cells are not fully understood.
- Intracellular host membranes are implicated in viral replication.
Purpose of the Study:
- To investigate the ultrastructural changes during DENV-2 replication in susceptible host cells.
- To elucidate the role of intracellular host membranes in DENV biogenesis.
Main Methods:
- Transmission electron microscopy (TEM)
- Whole-mount grid-cell culture techniques
- Electron tomography (ET) in C6/36, Vero, and SK Hep1 cells
Main Results:
- Observed large perinuclear vacuoles with mature DENV particles in C6/36 cells.
- Identified various DENV core structures associated with cellular membranes in Vero cells.
- Noticed distinct multivesicular and autophagic vesicles in SK Hep1 cells, visualized in 3D via ET.
Conclusions:
- DENV-2 replication involves significant interactions with intracellular host membranes.
- ET analysis provides novel insights into DENV-2 replication in human endothelial cells.
- Targeting membrane structures involved in DENV biogenesis offers a potential anti-dengue strategy.

