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Updated: Jun 10, 2026

Exploring Sequence Space to Identify Binding Sites for Regulatory RNA-Binding Proteins
Published on: August 9, 2019
RNA-binding protein Muscleblind-like 3 (MBNL3) disrupts myocyte enhancer factor 2 (Mef2) {beta}-exon splicing
Kyung-Soon Lee1, Yi Cao, Hanna E Witwicka
1Department of Pharmacology, University of Washington, Seattle, Washington 98195-2780, USA.
Abstract:
Mammalian MBNL (muscleblind-like) proteins are regulators of alternative splicing and have been implicated in myotonic dystrophy, the most common form of adult onset muscular dystrophy. MBNL3 functions as an inhibitor of muscle differentiation and is expressed in proliferating muscle precursor cells but not in differentiated skeletal muscle. Here we demonstrate that MBNL3 regulates the splicing pattern of the muscle transcription factor myocyte enhancer factor 2 (Mef2) by promoting exclusion of the alternatively spliced β-exon. Expression of the transcriptionally more active (+)β isoform of Mef2D was sufficient to overcome the inhibitory effects of MBNL3 on muscle differentiation. These data suggest that MBNL3 antagonizes muscle differentiation by disrupting Mef2 β-exon splicing. MBNL3 regulates Mef2D splicing by directly binding to intron 7 downstream of the alternatively spliced exon in the pre-mRNA. The RNA binding activity of MBNL3 requires the CX(7)CX(4-6)CX(3)H zinc finger domains. Using a cell culture model of myotonic dystrophy and myotonic dystrophy patient tissue, we have evidence that expression of CUG expanded RNAs can lead to an increase in MBNL3 expression and a decrease in Mef2D β-exon splicing. These studies suggest that elevating MBNL3 activity in myogenic cells could lead to muscle degeneration disorders such as myotonic dystrophy.
Insights
Muscleblind-like 3 (MBNL3) protein inhibits muscle differentiation by disrupting Mef2D splicing. This mechanism may contribute to muscle degeneration in myotonic dystrophy.
Area of Science:
- Molecular Biology
- Cell Biology
- Genetics
Background:
- Mammalian muscleblind-like (MBNL) proteins regulate alternative splicing and are linked to myotonic dystrophy.
- MBNL3 inhibits muscle differentiation and is found in proliferating muscle precursor cells.
Purpose of the Study:
- To investigate the role of MBNL3 in regulating muscle differentiation via Mef2 splicing.
- To elucidate the mechanism by which MBNL3 affects Mef2D splicing.
Main Methods:
- Demonstrated MBNL3's regulation of Mef2D β-exon splicing.
- Showed that Mef2D (+)β isoform expression overcomes MBNL3 inhibition.
- Identified MBNL3 direct binding to Mef2D pre-mRNA intron 7.
- Utilized a cell culture model and patient tissues.
Main Results:
- MBNL3 promotes exclusion of the Mef2D β-exon, inhibiting differentiation.
- MBNL3 binds to intron 7 of Mef2D pre-mRNA, requiring its zinc finger domains.
- Myotonic dystrophy models show increased MBNL3 and decreased Mef2D β-exon splicing.
Conclusions:
- MBNL3 antagonizes muscle differentiation by disrupting Mef2D β-exon splicing.
- Dysregulated MBNL3 activity and Mef2D splicing may cause muscle degeneration in myotonic dystrophy.
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