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Related Concept Videos

Condensins02:15

Condensins

Condensins are large protein complexes that use ATP to fuel the assembly of chromosomes during mitosis. They transform the tangled, shapeless mass of post-interphase DNA into individualized chromosomes by compacting, organizing, and segregating chromosomal DNA.
The plant and animal cells contain two types of condensin complexes—condensin I and condensin II. Both complexes have five subunits: two SMC (Structural Maintenance of Chromosomes) subunits, a kleisin subunit, and two HEAT-repeat...
Condensins02:15

Condensins

Condensins are large protein complexes that use ATP to fuel the assembly of chromosomes during mitosis. They transform the tangled, shapeless mass of post-interphase DNA into individualized chromosomes by compacting, organizing, and segregating chromosomal DNA.
The plant and animal cells contain two types of condensin complexes—condensin I and condensin II. Both complexes have five subunits: two SMC (Structural Maintenance of Chromosomes) subunits, a kleisin subunit, and two HEAT-repeat...
Step-Growth Polymerization: Overview01:03

Step-Growth Polymerization: Overview

Step-growth or condensation polymerization is a stepwise reaction of bi or multifunctional monomers to form long-chain polymers. As all the monomers are reactive, most of the monomers are consumed at the early stages of the reaction to form small chains of reactive oligomers, which then combine to form long polymer chains in the late stages. Hence, the reaction has to proceed for a long time to achieve high molecular weight polymers.
Many natural and synthetic polymers are produced by...
Nucleic Acid Structure01:25

Nucleic Acid Structure

The pentose sugar in DNA is deoxyribose, while in RNA the pentose sugar is ribose. The difference between the sugars is the presence of the hydroxyl group on the ribose's second carbon and a hydrogen on the deoxyribose's second carbon. The phosphate residue attaches to the hydroxyl group of the 5′ carbon of one sugar and the hydroxyl group of the 3′ carbon of the sugar of the next nucleotide, which forms  a 5′ to 3′ phosphodiester linkage.
DNA Structure
DNA has a double-helix structure. The...
Polymers02:34

Polymers

The word polymer is derived from the Greek words “poly” which means “many” and “mer” which means “parts”. Polymers are long chains of molecules composed of repeating units of smaller molecules, known as monomers. They either occur naturally, such as DNA and proteins, or can be constructed synthetically, like plastics. They have varied structural characteristics, such as linear chains, branched chains, or complex networks, that contribute to the properties that they exhibit. Additionally,...
Cationic Chain-Growth Polymerization: Mechanism00:57

Cationic Chain-Growth Polymerization: Mechanism

The cationic polymerization mechanism consists of three steps: initiation, propagation, and termination. In the initiation step of the polymerization process, the π bond of a monomer gets protonated by the Lewis acid catalyst, which is formed from boron trifluoride and water. The protonation of the π bond generates a carbocation stabilized by the electron‐donating group. In the propagation step, the π bond of the second monomer acts as a nucleophile and attacks the generated carbocation,...

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Synthetic Condensates and Cell-Like Architectures from Amphiphilic DNA Nanostructures
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Synthetic Condensates and Cell-Like Architectures from Amphiphilic DNA Nanostructures

Published on: May 31, 2024

DNA condensation by pH-responsive polycations.

Andreia F Jorge1, Rita S Dias, Jorge C Pereira

  • 1Department of Chemistry, Coimbra University, Rua Larga, 3004-535 Coimbra, Portugal.

Biomacromolecules
|August 20, 2010
PubMed
Summary
This summary is machine-generated.

pH significantly impacts DNA-polyethylenimine (PEI) complex formation. Complex properties like size and charge vary non-monotonically with pH, revealing critical factors in condensation behavior.

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Gene-therapy Inspired Polycation Coating for Protection of DNA Origami Nanostructures
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Gene-therapy Inspired Polycation Coating for Protection of DNA Origami Nanostructures

Published on: January 19, 2019

Area of Science:

  • Biochemistry
  • Materials Science
  • Physical Chemistry

Background:

  • Polyethylenimine (PEI) is a cationic polymer used in gene delivery.
  • DNA-polyethylenimine (PEI) complexes are crucial for gene therapy applications.
  • Understanding pH effects on complex formation is vital for optimizing delivery systems.

Purpose of the Study:

  • To investigate the influence of pH on DNA-PEI complex formation.
  • To characterize the physical and electrical properties of these complexes across a range of pH values.
  • To elucidate the role of linear charge density and chain number in DNA condensation.

Main Methods:

  • Potentiometric titration of PEI to determine acid-base behavior.
  • Precipitation assays to assess complex formation.
  • Agarose gel electrophoresis to evaluate DNA mobility.
  • Photon correlation spectroscopy for size analysis.
  • Zeta potential measurements for surface charge determination.

Main Results:

  • DNA-PEI complex properties (mobility, size, electrical properties) showed non-monotonic trends with pH.
  • Complexes exhibited strong binding and larger size at pH 4, versus smaller, more uniform populations at pH 8.
  • Charge inversion was observed across all studied pH values, even below charge neutralization.
  • Both linear charge density and the relative number of PEI chains influenced condensation.

Conclusions:

  • pH is a critical parameter controlling DNA-PEI complex formation and properties.
  • Non-trivial pH-dependent trends highlight the complexity of polycation-polyanion interactions.
  • These findings provide insights for designing effective gene delivery vectors by tuning pH conditions.