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DNA Base Pairing02:27

DNA Base Pairing

Erwin Chargaff’s rules on DNA equivalence paved the way for the discovery of base pairing in DNA. Chargaff’s rules state that in a double-stranded DNA molecule,
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Related Experiment Video

Updated: Jun 10, 2026

In Vitro Chemical Mapping of G-Quadruplex DNA Structures by Bis-3-Chloropiperidines
05:32

In Vitro Chemical Mapping of G-Quadruplex DNA Structures by Bis-3-Chloropiperidines

Published on: May 12, 2023

Effect of base sequence on g-wire formation in solution.

Lea Spindler1, Martin Rigler, Irena Drevensek-Olenik

  • 1Faculty of Mechanical Engineering, University of Maribor, Smetanova 17, 2000 Maribor, Slovenia.

Journal of Nucleic Acids
|August 21, 2010
PubMed
Summary

Researchers investigated G-rich DNA sequences forming G-wires, finding dialysis superior to thermal annealing for self-assembly. G-wire dimensions were accurately measured using dynamic light scattering and gel electrophoresis.

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Published on: September 19, 2017

Area of Science:

  • Biochemistry
  • Molecular Biology
  • Nanotechnology

Background:

  • G-rich DNA sequences can form G-wires, which are nanostructures with potential applications.
  • Understanding G-wire formation is crucial for DNA nanotechnology and biomaterials development.

Purpose of the Study:

  • To investigate the formation and dimensions of G-wires using various short G-rich DNA sequences.
  • To explore fundamental principles governing G-wire assembly, including sequence, preparation method, temperature, and concentration.

Main Methods:

  • Dynamic Light Scattering (DLS) for measuring particle size and dimensions.
  • Polyacrylamide Gel Electrophoresis (PAGE) for analyzing DNA structures and assembly.
  • Systematic variation of DNA sequences, preparation techniques (dialysis vs. thermal annealing), temperature, and oligonucleotide concentration.

Main Results:

  • Dialysis was found to be more effective for inducing macromolecular self-assembly than thermal annealing.
  • G-wire lengths of 5-6 nm were well-resolved by DLS and PAGE for intermediate-length DNA sequences.
  • The longest DNA sequence formed aggregates up to 11 nm, as measured by DLS.
  • Quadruplex topologies exhibited no concentration dependence within the 0.1 mM-0.4 mM range and remained stable upon heating.

Conclusions:

  • The method of preparation significantly impacts G-wire self-assembly, with dialysis being more efficient.
  • DLS and PAGE are reliable methods for characterizing G-wire dimensions, particularly for intermediate sequences.
  • G-wire formation and stability are influenced by DNA sequence length and preparation conditions.