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Updated: Jun 9, 2026

Measuring Single-Cell Mitochondrial DNA Copy Number and Heteroplasmy Using Digital Droplet Polymerase Chain Reaction
Published on: July 12, 2022
[Mutant copies of mitochondrial DNA in tissues and plasma of X-rays exposed mice]
Abstract:
With violations of the mitochondrial genome associated wide range of degenerative diseases, the development of tumor pathology, aging and the processes of cell death. We investigated the levels of mitochondrial DNA (mtDNA) with mutations and their total content in the tissues of the brain, and spleen of mice exposed to X-rays at doses of 1-5 Gy, and depending on the post-radiation time (8-28 days). These same mice were analyzed for the level of mutant copies of the extra cellular mtDNA (ec-mtDNA) and its total content in blood plasma. Mutations were determined by means of CEL-I endonuclease (mismatch-specific enzyme) cleavage of heteroduplexes, obtained by hybridization of PCR amplicons of mtDNA (D-loop region) of irradiated and control mice. The changes of total amount of mtDNA (ND4 gene) copies vs. nuclear DNA (GAPDH gene) measured by real-time PCR method. The results showed that in the tissues of the brain, and of the spleen of irradiated mice (with a maximum at 8 days after exposure) the level of mutant mtDNA copies, with a subsequent decline to a 28-day post-radiation time dramatically increased. Was shown that mutagenesis of mtDNA in the brain and spleen tissues of irradiated mice, well as mutagenesis of nuclear genes, has a linear dependence on the dose X-rays. In contrast, mutant nuclear genes, the majority of mutant mtDNA copies is eliminated from the tissues of the brain and of the spleen, while maintaining them at the same level of total content of mtDNA within 28 days after irradiation in mice. The results show that during this post-radiation time in the plasma of irradiated mice high levels of ec-mtDNA with mutations, with a maximum at the 14th day in the total circulating DNA maintained. These data suggest that the mutant copies of mtDNA eliminated from tissues cells of irradiated animals in the post-radiation period. Elevated levels of ec-mtDNA with mutations in the plasma can be considered as a potential marker for the assessment of radiation injury of organism.
Insights
Mitochondrial DNA (mtDNA) mutations increased in mouse tissues after X-ray exposure, but were cleared, appearing as extracellular mtDNA (ec-mtDNA) in plasma. Elevated ec-mtDNA with mutations may indicate radiation injury.
Area of Science:
- Molecular Biology
- Radiation Biology
- Genetics
Context:
- Mitochondrial genome integrity is crucial, as its damage links to diseases, aging, and cell death.
- Radiation exposure can induce mutations in both mitochondrial DNA (mtDNA) and nuclear DNA.
- Understanding the fate of mtDNA mutations post-irradiation is vital for assessing radiation damage.
Purpose:
- To investigate the levels and dynamics of mtDNA mutations and total mtDNA content in mouse brain and spleen tissues following X-ray exposure.
- To analyze the levels of mutant extracellular mtDNA (ec-mtDNA) and its total content in blood plasma after irradiation.
- To determine the relationship between radiation dose, post-exposure time, and mtDNA mutagenesis.
Summary:
- X-ray exposure (1-5 Gy) significantly increased mutant mtDNA copies in mouse brain and spleen tissues, peaking at 8 days post-irradiation.
- Mutagenesis of mtDNA in tissues showed a linear dose-dependent relationship with X-rays, similar to nuclear genes.
- Mutant mtDNA was cleared from tissues within 28 days, while elevated levels of mutant ec-mtDNA were detected in plasma, peaking at 14 days.
Impact:
- Mutant mtDNA clearance from tissues suggests a repair or removal mechanism post-radiation.
- Elevated ec-mtDNA with mutations in plasma serves as a potential biomarker for assessing radiation injury.
- Findings contribute to understanding the long-term effects of radiation on cellular and extracellular genetic material.
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