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In Vitro Ubiquitination and Deubiquitination Assays of Nucleosomal Histones
Published on: July 25, 2019
The ubiquitin carboxyl hydrolase BAP1 forms a ternary complex with YY1 and HCF-1 and is a critical regulator of gene
Helen Yu1, Nazar Mashtalir, Salima Daou
1University of Montréal, Maisonneuve-Rosemont Hospital Research Center, Department of Medicine, Montréal, Québec, Canada.
Abstract:
The candidate tumor suppressor BAP1 is a deubiquitinating enzyme (DUB) involved in the regulation of cell proliferation, although the molecular mechanisms governing its function remain poorly defined. BAP1 was recently shown to interact with and deubiquitinate the transcriptional regulator host cell factor 1 (HCF-1). Here we show that BAP1 assembles multiprotein complexes containing numerous transcription factors and cofactors, including HCF-1 and the transcription factor Yin Yang 1 (YY1). Through its coiled-coil motif, BAP1 directly interacts with the zinc fingers of YY1. Moreover, HCF-1 interacts with the middle region of YY1 encompassing the glycine-lysine-rich domain and is essential for the formation of a ternary complex with YY1 and BAP1 in vivo. BAP1 activates transcription in an enzymatic-activity-dependent manner and regulates the expression of a variety of genes involved in numerous cellular processes. We further show that BAP1 and HCF-1 are recruited by YY1 to the promoter of the cox7c gene, which encodes a mitochondrial protein used here as a model of BAP1-activated gene expression. Our findings (i) establish a direct link between BAP1 and the transcriptional control of genes regulating cell growth and proliferation and (ii) shed light on a novel mechanism of transcription regulation involving ubiquitin signaling.
Insights
The tumor suppressor BAP1 (deubiquitinating enzyme) directly interacts with transcription factors YY1 and HCF-1 to regulate gene expression. This reveals a novel mechanism linking ubiquitin signaling to cell growth and proliferation control.
Area of Science:
- Molecular Biology
- Gene Regulation
- Ubiquitin Signaling
Background:
- The tumor suppressor BAP1, a deubiquitinating enzyme (DUB), regulates cell proliferation but its mechanisms are unclear.
- BAP1 interacts with and deubiquitinates the transcriptional regulator HCF-1.
Purpose of the Study:
- To elucidate the molecular mechanisms of BAP1 in transcriptional regulation.
- To investigate the interaction of BAP1 with transcription factors HCF-1 and YY1.
Main Methods:
- Co-immunoprecipitation assays to study protein interactions.
- In vivo studies to confirm complex formation.
- Reporter gene assays to assess transcriptional activity.
- Analysis of gene expression changes.
Main Results:
- BAP1 forms multiprotein complexes with HCF-1 and YY1.
- BAP1 directly binds to YY1 via its coiled-coil motif.
- HCF-1 mediates the interaction between BAP1 and YY1.
- BAP1 activates transcription in an enzymatic-activity-dependent manner.
- YY1 recruits BAP1 and HCF-1 to target gene promoters, like cox7c.
Conclusions:
- BAP1 directly links to transcriptional control of genes involved in cell growth and proliferation.
- A novel mechanism of transcription regulation involving ubiquitin signaling is uncovered.
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