Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Sample Handling01:02

Sample Handling

Transportation of samples from the collection point to the laboratory, as well as storage and preservation techniques, are crucial for maintaining sample integrity and ensuring accurate and reliable test results.
Samples should be transported carefully from collection points to the laboratory. They should be properly sealed and clearly labeled to prevent cross-contamination. To preserve the sample integrity, optimal temperature conditions during transport are essential. This could involve using...
Microbial Classification System01:24

Microbial Classification System

Classification is the process of organizing organisms into hierarchically inclusive groups based on their phenotypic similarities or evolutionary relationships. A species comprises one or more strains, and closely related species are grouped into genera. Genera are further classified into families, families into orders, orders into classes, and so forth, up to the domain level, which is the broadest taxonomic rank derived from a combination of phenotypic and genotypic data.The nomenclature of...

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

The European Prospective Investigation into Cancer and Nutrition Cohort (EPIC): a gateway to rare cancer epidemiological research.

ESMO rare cancers·2025
Same author

Assessment of the current and emerging criteria for the histopathological classification of lung neuroendocrine tumours in the lungNENomics project.

ESMO open·2024
Same author

Secondary organizing pneumonia associated with protracted COVID: A case series.

Infectious diseases now·2024
Same author

Season-dependent physiological behavior of <i>Miscanthus x giganteus</i> growing on heavy-metal contaminated areas in relation to soil properties.

Heliyon·2024
Same author

Integrative and comparative genomic analyses identify clinically relevant pulmonary carcinoid groups and unveil the supra-carcinoids.

Nature communications·2019
Same author

[Dyspnea in a 64 year-old woman].

La Revue de medecine interne·2019
Same journal

Cross-Domain Transfer Learning from Peptides to Metabolites Using a Multi-Property Fine-Tuned LLM.

Bioinformatics (Oxford, England)·2026
Same journal

Biomedical Concept Recognition with Error-aware Negative-enhanced Ranking Framework.

Bioinformatics (Oxford, England)·2026
Same journal

TEDLH: Domain HMMs for sensitive detection of remote homologues.

Bioinformatics (Oxford, England)·2026
Same journal

PLNFGL: Joint Estimation of Multi-Condition Gene Networks from Single-cell RNA-seq Data.

Bioinformatics (Oxford, England)·2026
Same journal

MCFST: Spatial domain identification method based on multi-view graph convolutional network and graph fusion network.

Bioinformatics (Oxford, England)·2026
Same journal

SpaBiT: Enhancing Spatial Transcriptomics Resolution via Bidirectional Attention Transformers.

Bioinformatics (Oxford, England)·2026
See all related articles

Related Experiment Video

Updated: Jun 9, 2026

Biobank for Translational Medicine: Standard Operating Procedures for Optimal Sample Management
08:01

Biobank for Translational Medicine: Standard Operating Procedures for Optimal Sample Management

Published on: November 30, 2022

A sample storage management system for biobanks.

C Voegele1, L Alteyrac, E Caboux

  • 1Genetic Cancer Susceptibility Group, International Agency for Research on Cancer (IARC), Lyon, France. voegele@iarc.fr

Bioinformatics (Oxford, England)
|September 3, 2010
PubMed
Summary
This summary is machine-generated.

Developing a flexible sample management system (SMS) is crucial for large-scale biobanks. This new system, built on a three-tier architecture, accommodates diverse study designs and specimen types for cancer research.

More Related Videos

Biobanking of Human Aqueous and Vitreous Liquid Biopsies for Molecular Analyses
14:54

Biobanking of Human Aqueous and Vitreous Liquid Biopsies for Molecular Analyses

Published on: September 11, 2023

Establishment of a Clinic-based Biorepository
07:50

Establishment of a Clinic-based Biorepository

Published on: May 29, 2017

Related Experiment Videos

Last Updated: Jun 9, 2026

Biobank for Translational Medicine: Standard Operating Procedures for Optimal Sample Management
08:01

Biobank for Translational Medicine: Standard Operating Procedures for Optimal Sample Management

Published on: November 30, 2022

Biobanking of Human Aqueous and Vitreous Liquid Biopsies for Molecular Analyses
14:54

Biobanking of Human Aqueous and Vitreous Liquid Biopsies for Molecular Analyses

Published on: September 11, 2023

Establishment of a Clinic-based Biorepository
07:50

Establishment of a Clinic-based Biorepository

Published on: May 29, 2017

Area of Science:

  • Biobanking
  • Bioinformatics
  • Cancer Research

Background:

  • Large-scale biobanks are essential for molecular pathological and epidemiological studies.
  • Managing diverse specimen collections and study designs presents significant challenges for sample management systems (SMS).
  • Existing commercial or academic SMS often lack the flexibility to handle varied sample types and analytical workflows.

Purpose of the Study:

  • To develop a versatile and adaptable sample management system (SMS) capable of accommodating diverse biobank study designs and specimen collections.
  • To address the limitations of current SMS in handling the complexity of large-scale international research initiatives.
  • To create a robust system for efficient specimen cataloguing and tracking in molecular pathology and epidemiology.

Main Methods:

  • Developed a three-tier architecture system utilizing an Oracle database and an Oracle Forms web application.
  • Implemented data import via forms or CSV files for user-friendly data entry.
  • Enabled information retrieval through multi-criteria queries generating various report formats (tables, Excel, graphs).

Main Results:

  • The developed SMS is flexible, expandable, and adaptable to almost all biobank types.
  • The system ensures a high degree of data security and confidentiality.
  • It facilitates efficient specimen cataloguing, tracking, and data retrieval for complex analytical processes.

Conclusions:

  • The developed sample management system is essential for automating procedures in large-scale biobanks.
  • Its flexible design accommodates diverse study types and specimen collections, crucial for cancer research.
  • The system enhances data management efficiency, security, and adaptability for global biobanking initiatives.