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Updated: Jun 9, 2026

Next Generation Sequencing for the Detection of Actionable Mutations in Solid and Liquid Tumors
Published on: September 20, 2016
Cells expressing FLT3/ITD mutations exhibit elevated repair errors generated through alternative NHEJ pathways:
Jinshui Fan1, Li Li, Donald Small
1Department of Radiation Oncology, University of Maryland School of Medicine, Baltimore, MD, USA.
Internal tandem duplication (ITD) mutations in FMS-like tyrosine kinase-3 (FLT3) promote DNA deletions via microhomology-mediated end-joining. Inhibiting FLT3 signaling may reduce genomic instability in acute myeloid leukemia.
Area of Science:
- Molecular Biology
- Genetics
- Cancer Research
Background:
- FMS-like tyrosine kinase-3 (FLT3) internal tandem duplication (ITD) mutations are linked to poor prognosis in acute myeloid leukemia (AML).
- DNA double-strand breaks (DSBs) are primarily repaired by the DNA-PK-dependent nonhomologous end-joining (NHEJ) pathway.
- Alternative NHEJ pathways, utilizing microhomology, contribute to genomic instability and cancer progression.
Purpose of the Study:
- To investigate the role of microhomology-mediated end-joining in FLT3/ITD-driven DNA deletions.
- To examine the impact of FLT3/ITD mutations on DNA repair pathway components.
- To assess the therapeutic potential of targeting FLT3 signaling and DNA ligase IIIα.
Main Methods:
- Analysis of FLT3/ITD-expressing cell lines and bone marrow mononuclear cells from knock-in mice.
- Quantification of Ku proteins and DNA ligase IIIα levels.
- Assessment of DNA deletions and DSB repair following FLT3 inhibitor treatment.
Main Results:
- FLT3/ITD expression leads to DSB repair at microhomologous sequences, causing frequent DNA deletions.
- Ku protein levels are decreased, while DNA ligase IIIα levels are increased in FLT3/ITD cells.
- FLT3 inhibition reduces DNA ligase IIIα levels and DNA deletions, indicating FLT3 signaling regulates DSB repair pathways.
Conclusions:
- FLT3/ITD signaling promotes genomic instability by favoring error-prone microhomology-mediated end-joining.
- Targeting FLT3 signaling or DNA ligase IIIα may represent a therapeutic strategy to reduce repair errors in AML.
- Understanding DSB repair mechanisms in FLT3-mutated AML is crucial for developing effective treatments.
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