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Updated: Jun 9, 2026

Analyzing Large Protein Complexes by Structural Mass Spectrometry
Published on: June 19, 2010
Unexpected formation of complexes between protonated organic ligand and neutral salt molecule studied by electrospray
Błażej Gierczyk1, Grzegorz Schroeder, Rafał Frański
1Faculty of Chemistry, Adam Mickiewicz University, Grunwaldzka 6, 60-780 Poznań, Poland.
Abstract:
Protonated organic ligands containing pyridine moieties form complexes with undissociated salt molecules present in solution, especially with ZnCl(2), as proved by electrospray ionization mass spectrometry. In the gas phase, the ions observed, for example [L1H + ZnCl(2)](+), lose an HCl molecule producing ions [L1 + ZnCl](+) (L1 = 1,1,3,3-Tetramethyl-1,3-bis(3-(3-(2-pyridyl)propoxy)propyl)disiloxane). The use of other zinc salts (for example ZnI(2)), also yielded the complexes of between protonated ligands and neutral salt molecules (for example, [L1H + ZnI(2)](+)), but losses of respective acid molecules (for example, HI), proceeded with higher efficiencies than the loss of HCl molecule. An increase in solvent polarity, namely the use of water instead of methanol, led to the substantial lowering of [L1H + ZnCl(2)](+) ion abundances, since fewer undissociated species (for example, ZnCl(2)) were present in the solution. Ligand L2 (1,3,5,7-tetramethyl-1,3,5,7-tetrakis(3-(3-(2- pyridyl)propoxy)propyl)cyclotetrasiloxane, larger than L1), forms doubly charged ions containing one and two ZnCl(2) molecules, for example [L1H(2) + ZnCl(2)](+2).
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