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Updated: Jun 9, 2026

Application of I TASSER, trRosetta, UCSF Chimera, HADDOCK server, and HEX loria for De Novo and In Silico Design of Proteins
Published on: July 8, 2025
De novo structure-based design of anion receptors
1Chemical Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, USA. haybp@ornl.gov
Abstract:
This tutorial review presents an account of how de novo structure-based design methods have been used to facilitate the discovery of novel anion receptors formed by combination of hydrogen bond donor groups. Topics include the development of criteria needed for the design, how the input structures for each design were obtained, and subsequent use of molecular modeling to more accurately rank the initial list of candidates produced by the builder. The effectiveness of the design approach is illustrated in several cases where host molecules identified on the computer were subsequently synthesized and shown to function as efficient anion hosts.
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